Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02494 ATGAGCGGTGACGCCACGAACTGGGACGAAGATGCATACAGGGAAACCGTACTGAAGGAGAGGGAGATTCAAACGCGAACCGTTTTCCGAACCGCTTGGGCCCCGCCCTACAGCACTAACCTCGATACACTCCTTGTCGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCGCCGCCTCTAAGCTAAAAAACCCGTTTGGTTTTGTCAACGCCGATACAGATACGTTATTGGCAGAGCCAAATTGCTTCGTTCAAGCGCATGATGGACCTGCGTATGATGTCAAGTTTTATGGTGATGGCGAAGATGCTCTCATGCTGAGCTGTGGTGACGATGGTCGGATTCGAGGATGGAGATGGAAGGAATTTTCAAACTCAAGTTCTTTGGTTTTTTCCCAAGGAAATGACATCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCTTGGGGTGCCCTTTCACCTATCCCTGAGAATAATGCTATTGATGTTAATACTCAGGGGGGATCTGTTTTTGCTGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTATTCAAGGGGCACACTGACTATTTGCATTGTATAGTTGCACGCAACTCATCCAATCAGATCGTAACAGGTTCAGAGGATGGGACAGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAAGTGATTGATCCAGCAAAAGATTTGAAGTTAAAGGGATCTGCTTCATGGGTTGGCTGTGTTGCTCTAGATGCAAGTGAGAGTTGGTTGGCTTGCAGTAGTGGACGATATATATCACTTTGGAACCTTCCTGCTTCAGAATGTGTATCAAAGATTCCAACTCGTGCTTGTGTACAGGACATGTTATATGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAACCGCTTTGACATGAACGGCACGATCCTATCACAAATACAATGTGCTCCTTCATCGTCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCATTGCCAATGTGTCTAA 1113 0.4546 MSGDATNWDEDAYRETVLKEREIQTRTVFRTAWAPPYSTNLDTLLVASSDGSVASYSIAASKLKNPFGFVNADTDTLLAEPNCFVQAHDGPAYDVKFYGDGEDALMLSCGDDGRIRGWRWKEFSNSSSLVFSQGNDIKPVLDVVNPQHKGPWGALSPIPENNAIDVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHTDYLHCIVARNSSNQIVTGSEDGTARIWDCKSGKCTQVIDPAKDLKLKGSASWVGCVALDASESWLACSSGRYISLWNLPASECVSKIPTRACVQDMLYDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFHCQCV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02494 370 SUPERFAMILY WD40 repeat-like 32 357 IPR036322 GO:0005515
Cca11g02494 370 Gene3D - 6 143 IPR015943 GO:0005515
Cca11g02494 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Cca11g02494 370 Pfam WD domain, G-beta repeat 246 277 IPR001680 GO:0005515
Cca11g02494 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 318 356 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 239 277 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 14 57 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Cca11g02494 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Cca11g02494 370 Gene3D - 146 368 IPR015943 GO:0005515
Cca11g02494 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Cca11g02494 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 367 IPR042626 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02494 167 233 Eukaryotic Initiation Factors Gene Family AT2G46280 32.836 6.40e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02494 K13175 K03257 gmx:100806423 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02494 11 52108605 52115267 Cca11g02494 11 52108605 52115267 ECH