Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02490 ATGGAACCTCGTGTTGGGAACAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGCACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGCTACTGTATGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATTTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCAGATAATTTTCTAATGGGATTAGGAAGACGTGCAAATCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAAAGATAGTTCAACACATCAACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAATCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAGGCAGGAACGAAGAAACAGAAATACGAGAAAATCAGTGAAAAGAAGGTTTCTACTTCTATTGAAGCCTTGTGTCGGGGTTATCCAACAGAATTTGCATCTTACTTCCATTACTGCCGGTCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGACTGGACCATTTTGAAGTATCAGCAATCACAGCTAGCTACTCCTCCAACACGTGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAGTGCCCCCAGCTGTAACTAATGCTGATAGGCATACAGGAGGTGAAGATGGACGACCTCCTGCTTTGGTTTCAGTGGATTCCTCGAGGCGCAGAGTTTCAGGGCCCATTTTAAATACTTTATCAGGTGCCAATGCGTTGGGTCAGTCAAGTGGATCAAGGCGAGTTGCTGTTTCTAGTAGCCGTGATGCATTTGTTGGCACCGAGTCAGATATTCGTACTCGCACTGCTGAGGCTAGCCCTGGAGCGGCACAAAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTTACATCGGCGAGAAATGCTTCTCATGTGAAAAATTATGACACTGCACTTAGGGGCATGGAAGGTTTGCAATTAGAGAATGATGAGAGGACCCATTATTAA 1362 0.4244 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYKDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGVPPAVTNADRHTGGEDGRPPALVSVDSSRRRVSGPILNTLSGANALGQSSGSRRVAVSSSRDAFVGTESDIRTRTAEASPGAAQRGLSGQRSSPIGSSDPKRVVTSARNASHVKNYDTALRGMEGLQLENDERTHY 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02490 453 MobiDBLite consensus disorder prediction 348 383 - -
Cca11g02490 453 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02490 453 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cca11g02490 453 MobiDBLite consensus disorder prediction 402 428 - -
Cca11g02490 453 PANTHER CASEIN KINASE I-LIKE 1 439 - -
Cca11g02490 453 PANTHER CASEIN KINASE-RELATED 1 439 - -
Cca11g02490 453 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02490 453 MobiDBLite consensus disorder prediction 303 322 - -
Cca11g02490 453 Gene3D Transferase(Phosphotransferase) domain 1 1 310 - -
Cca11g02490 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca11g02490 453 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02490 453 MobiDBLite consensus disorder prediction 303 428 - -
Cca11g02490 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca11g02490 453 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02490 Cca-Chr11 52068655 52082123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02490 7 223 EF-hand Containing Proteins AT2G17890 27.111 5.82e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca11g02490 Pkinase 6.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02490 K02218 - gmx:100785851 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02490 11 52068655 52082123 Cca11g02490 11 52068655 52082123 ECH
Cca11g02490 11 52068655 52082123 Cca08g01429 08 42557013 42563571 PCT