Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02489 ATGGTCTATAAAAGGAAAAGAGAAGAGAGTTGTGTGAAGAGAAAAGAGGTTGGCACAGTCGCGGCAAGAGAGAAAGCAAAGATGGGAGAAGAAGTGGCGAGAGTGAAAGCAGAGTTGTTGGAGGAGAGCGAGAGCAAGGAGTCGGGAGTGACGGAAGAAGAGACGACGGTGCAGGTGAAAGAAGAGGTGGATGACGGCGCCGTCAACGCCAcgtcatcgtcgccgaaaccgatggaggggctgcacgaggtgggtccaccaccgttcctgaagaagaccttcgaaatggtggaggactccgacaccgaccccgttgtgtcgtggagccaaagtcgcgacagcttcatcgtttgggactctcacgaattctccaaaacccttctccccaagtacttcaagcacagcaatttctccagcttcgttcgccagctcaacacctatGGTTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGAAGGAGGAGCAAGTATAACAAACTGCACCATGGATCATTCAACATGATGAAGCCAGGGGTAGAGTCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTAACAAATGTTCAGGAGAGAGTTCGCTGTGCTGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACCAGAATGGCCAGAAAGCCTGCGTTTGTTGACCAGTTAATCCAAAAACTTAGGCGTAAAAGAGAGCTTGAGGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGTACCCCGTGCAATGCAACCTTCCCTAAGGCCACGGAGACAGCCCCTAGTGTTGATTGTAGACAACAAGGTCATAAACAGTTCTCTACACTGCAATCAGAGCTCAATGGATTTCTGTCTGAAACTATGAACACCAACGACATGGACCACCCAATTCCCTCTCCTTTGGAAGATGAATTGTGCAGCTCTGTGCAAGGGTTAAGGACCAATTCTACTAGAGCAAGTGCACAAGATTCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGGGAAAATTCTATTGTTGATGAAGAAGAACTAGATGTGAATGACTCAAATATCTATCTTGAACTAGAGGATTTGATTACCAAGCCAACAGATTGGGTTGGATCTGCTGGTGGATTGGTGGGACAAACAAGTTGA 1260 0.369 MVYKRKREESCVKRKEVGTVAAREKAKMGEEVARVKAELLEESESKESGVTEEETTVQVKEEVDDGAVNATSSSPKPMEGLHEVGPPPFLKKTFEMVEDSDTDPVVSWSQSRDSFIVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHHGSFNMMKPGVESEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERVRCAEMKQYQMMFFLTRMARKPAFVDQLIQKLRRKRELEGNDMVKRPRLMGTPCNATFPKATETAPSVDCRQQGHKQFSTLQSELNGFLSETMNTNDMDHPIPSPLEDELCSSVQGLRTNSTRASAQDSSSAYHVMSEKLMRENSIVDEEELDVNDSNIYLELEDLITKPTDWVGSAGGLVGQTS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02489 419 Gene3D - 82 179 IPR036388 -
Cca11g02489 419 Coils Coil 200 220 - -
Cca11g02489 419 SMART hsfneu3 85 178 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g02489 419 Pfam HSF-type DNA-binding 89 178 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g02489 419 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 60 404 - -
Cca11g02489 419 SUPERFAMILY "Winged helix" DNA-binding domain 85 178 IPR036390 -
Cca11g02489 419 PRINTS Heat shock factor (HSF) domain signature 89 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g02489 419 PRINTS Heat shock factor (HSF) domain signature 127 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g02489 419 PRINTS Heat shock factor (HSF) domain signature 140 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca11g02489 419 MobiDBLite consensus disorder prediction 39 65 - -
Cca11g02489 419 MobiDBLite consensus disorder prediction 39 61 - -
Cca11g02489 419 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 60 404 IPR027725 -
Cca11g02489 419 ProSitePatterns HSF-type DNA-binding domain signature. 128 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02489 Cca-Chr11 52062842 52065224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02489 75 407 HSF AT2G26150 42.815 2.23e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca11g02489 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02489 K09419 - gmx:100818430 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02489 11 52062842 52065224 Cca11g02489 11 52062842 52065224 ECH