Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02484 ATGGATGGTGTCTTCTCCCTCACTGAAGCTGTCAGAGCTGAATTTCTCTGCTCCCTCGTGCACTCTTTTGGTTGCACTTACGTTTCTCTCTGGCAATATGATTCCAATTTATCCAATCGTTTGTTCTTCTTGGATGGGTTCTATGATGTAATGAACAACCAACTAAGGTCTTCTTTAGGGAATGTAGCCGAATCGCTTTTTCACCAGTACCAGACTTTAACATTTCATGTTCATGACGGCTGTGTTCCTGGAGTCGCTTTCACGAACCACATTCCGTACTTAGAGCTGCAACGATCGGATCTTCTAAGACTCACATCCAATGAAATACAGGCACAATTCTTCCAGGAAGCAAGGATTGAGGGCAGTGAATGGGAGGAGCCTGGCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCGGACGTAATTCAATGGCAACTTGACCAATCACGCACTCAGAATACTGATAAATAG 468 0.4487 MDGVFSLTEAVRAEFLCSLVHSFGCTYVSLWQYDSNLSNRLFFLDGFYDVMNNQLRSSLGNVAESLFHQYQTLTFHVHDGCVPGVAFTNHIPYLELQRSDLLRLTSNEIQAQFFQEARIEGSEWEEPGFEEAVRRVVADVIQWQLDQSRTQNTDK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02484 155 PANTHER - 1 115 - -
Cca11g02484 155 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 115 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02484 Cca-Chr11 52019401 52020942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02484 1 120 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.710 5.85e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02484 - - ccaj:109806786 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02484 11 52019401 52020942 Cca08g01440 08 42719230 42723446 PCT