Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02476 ATGATTTTTTTTGGGGGTAGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATTCCAACGTAGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCATCTGTTGGAAATAGAGATAAGCAGAAGTTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATGCCACCTTATCGCCATACACATTTGTGGAGAAAAGAATTTCTCCAACAGACACCACAAAGAGATCCAGTGATTCTATCTCAGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCGGGACATGGTGATAAGATGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTTCGCGAGGAGAGAAGTGCAACTTTCGACATGATATAGATGCAAGGGAGCAGTGTGTGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGTAACTTTAAACACAGCTTGCTGGAGGAAGGTGACAGACATCCTTCTAGGAGGCCTGGATCTGAAAATACTAGGTCTGGCAGATCAAAAGAATGTTGGTTTTGTTTGTCAAGCCCGAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCAATGGCTAAAGGTCCACTTGTTGAAGACCACGTACTGATAATACCAGTTGAGCACATGCCTAGTACCTTATCTATGTCTTCTGAATCTGAAATTGAACTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTTATCTTTTTCGAGTGGGCCTCCATACGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCAAAAGCAGTTATGGTTGAAAAAGTTTTCAGTTTAGCTGCACAGAAGTTGGGATTTAAATTTGTGGCCAAGAAATTTGATAGTATTTCTGATGGAAGAAAGTTTTTAAAGACGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGTGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAGGTTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGGTTGCTTGATATGGCAGATAATGCTGATTGGAGGAATCGCAAACATAGCAAAGATGAAGAAATGAAAATTGTTGAAGATTTCAAGAAACGATTTCAAGAATATGATCCAAACTGTTGA 1245 0.4064 MIFFGGSYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAMKTTNATLSPYTFVEKRISPTDTTKRSSDSISDSQYWRYDVSQKRQKHEAGHGDKMCFKFVSSGSCSRGEKCNFRHDIDAREQCVRGVCFDFLNKGKCERGPDCNFKHSLLEEGDRHPSRRPGSENTRSGRSKECWFCLSSPNVESHLIISIGENYYLAMAKGPLVEDHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWASIRGTHANLQAIPIPSSKAVMVEKVFSLAAQKLGFKFVAKKFDSISDGRKFLKTQIDGDSSLFYAQIPGGTILLHHVEEKERFPAQFGREVLAGLLDMADNADWRNRKHSKDEEMKIVEDFKKRFQEYDPNC 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02476 414 Gene3D - 106 176 - -
Cca11g02476 414 Gene3D - 195 315 IPR036265 -
Cca11g02476 414 PANTHER CWF19-LIKE PROTEIN 1 8 413 - -
Cca11g02476 414 SUPERFAMILY CCCH zinc finger 120 146 IPR036855 GO:0046872
Cca11g02476 414 SUPERFAMILY HIT-like 199 270 IPR036265 -
Cca11g02476 414 Pfam Protein similar to CwfJ C-terminus 1 195 308 IPR006768 -
Cca11g02476 414 ProSiteProfiles Zinc finger C3H1-type profile. 154 177 IPR000571 GO:0046872
Cca11g02476 414 Pfam Protein similar to CwfJ C-terminus 2 323 411 IPR006767 -
Cca11g02476 414 SMART c3hfinal6 119 144 IPR000571 GO:0046872
Cca11g02476 414 SMART c3hfinal6 151 176 IPR000571 GO:0046872
Cca11g02476 414 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 8 413 IPR040194 -
Cca11g02476 414 ProSiteProfiles Zinc finger C3H1-type profile. 122 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02476 Cca-Chr11 51925605 51931285 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca11g02476 CwfJ_C_1 3.8e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02476 K24939 - gmx:100782106 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02476 11 51925605 51931285 Cca11g02476 11 51925605 51931285 ECH