Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02475 ATGGTGGCTTTGGCTTTGATGCTGCAGCTGCTGAAGCTCTACATCACTGGCTTTGCTGTGACAGCCCAAGAATCCAACGCATTTTTTCCTGTCATTCCTCCTAGAGTAGGAACACTTGGTCCTATTTACCACGGAGAGGGAAGCAAAGCACCAAACGTACCACCAGATGGAGATGGGTTTGTCATATCCTCATCTCCAGCTAGCTTACATGTGTATCTTTCACCTAGCTCTCCAACAATGCCAAATGGGCCATTTCTTCAGCCTCCAAAGACATTCCCACCTCCAACAGCTGCTCCAACCCCTCAGAAGATTAAAGACATTGAACCATTCAAATCTCCAAGTCCAAGCAGTATAGCATTATCACCACCATATGAGGTTGTTCCCTCACCATCAGCAGTTCAAGGGAACAAGCCACCATCTGTAAATACAAGTCCACCTCAGATGAAAGTACCTTCTGTTAGGCCTCCTGTCTCCACACCAACTGCTCCAGCCCCTATAGCAGTTAATTTGACAAAAGAATCACCTGTCAGCCAGCCTCCAGAACATGGAGTTTTGGCACCAATTGTTCACCAAAGGAATGCAAGTATGGGTCACAACTTGGAGCCTGCTCAACCAGCCTCAGTTGCTATACCTCCCACAACTCACAAATTAAAAACAATGGACAGAGAACCAACACAGCATGGAAGCATTCCGCCTAATGTTCATAAAAGCATTACAAATAAAGGTCACACTTCTGAGCCAGTTTCACCGGAATCTGTTGCATCCCCACCAAGGAAAGTGGAAAATAACCCACCAGAGGCCCACCCTATTGTCCCAACAACAACTCCATCCATATTACCTGTTGCCTCTCCCACTCCTTTGAGAAGCATCAATTGGAAGAAAGGTGGAGCACCAGTTGTTGCCCCTTTGTCCAGAAATCCAAAGCCATTTCCAGCTGTAATACACTCCCATGCTCAAGCTCCCGCAGCACAAAACGCGTGGCAATTACATCATGCTCCCGAGCCATTGATTTCACCTCCTAAATCTCCTTCCAATAAAGAATATCATTCTCCTATGATGTCACCTTCGACCTCATTTTATAAGCATCCTCGTACAGGAGAAGCAATTCCTCCCTTATTGCCACCATCAAGTGGACAAAGACATCATGCTCCACCACCAATGAACTCAAGTTCCTCTATAAGTACTTCAGTTTCCCCATTGTCTTCCCCTATTCATTCACACATGGACCAAGTTTCACCTGCTAATTCTCCATCAATCAAATTTGCACCTCCCCCAACCAGAATACCTCCATCTGAGTCTTCTTCAAAGAGACCCAAGATGCCAATACTGCCTCAAGTTCAAGCACTGCCACCCCCACCTCCTAATGAAGATTGTTTATCAACAGTGTGCACAGAACCTTATACAAATTCTCCGCCTGGAGAACCTTGCAGATGCGTCTGGCCCATGCGCATTGGTCTTCGCCTTAGTGTTTCTCTCTATACCTTCTTCCCTTTGGTTTCAGAACTAGCTTCTGAAATTGCCACTGGGGTTTTCATGAAACAAAGTCAAGTTCGCATTATGGGAGCAAATGCAGCAGACCAACAACCTGAGAAAACTGTTGTCCTTATTGATTTGGTGCCACTTGGGGGAGAGTTTGATAATACTACAGCCTTTTTGACTTCTGACAGATTTTGGCACAAAAAGGTTCTTATAAAAGCTTTCTACTTTGGAGACTATGACGTGTTATATGTGACTTATCCAGGTTTACCTCCTTCTCCTCCTTTACGTCCTTCAAGCCTTAACATCTTCGATGGTGGTCCATATTCCACTAATGGCAGTAATGGAGGGAAAATAAAGCCCTTTGGGGTTGACATACAGAAGAAACATCATAAAGGTGGACTTAGTAGAGGCATAATTGCCATCATAGCTGTTACAGTTTCTTTAGCAGTTGTTTTATGTGCTTCTGCTGCCTGGTTCATGATCAAGTTCAGAGATCATGTTAATCAGCCAGTATCAACCCCACGGCAGCTTTTGCCACCTTCTCTCACAAAAGAACCAGGCACTGCTGGATCACTTAGAAGTGGGGGAGTTGGTTCAGTTTCCACATCATTTCGATCTAGCATTGCTGCTTATACAGGATTTGCTAAGACTTTCGGTATGAATGACATTGTGAAAGCTACTGATAATTTTCATGTTTCAAGAATACTTGGAGAAGGCGGTTTTGGGCGCGTGTACAGCGGTATCCTTGAAGATGGGATGGAAGTGGCAGTGAAAGTTCTAAAGAGGGAGGACCATCATGGCGATCGTGAATTCTTAGCTGAAGTTGAAATGCTTAGTCGTCTTCACCATAGAAATTTGGTCAAGTTAGTTGGTATATGTACTGAAGACAGCTTCCGCTGCTTGGTTTATGAACTCATTCCAAATGGAAGCGTGGAATCCCATTTACATGGGGTTGATAGGGAAAACAGCCCACTTGATTGGGGTGCCCTGATGAAGATAGCTCTTGGTGCAGCTCGTGGTCTAGCTTACCTGCACGAAGATTCAAGTCCCCGTGTTATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGAAGGTGATTTTACACCTAAAGTATCTGATTTTGGCTTGGCTCGAACAGCAACAGATGAGGAGAATAAACACATATCAACACGCGTCATGGGAACTTTTGGTTACGTGGCTCCGGAGTATGCGATGACTGGCCATCTTCTTGTCAAGAGTGATGTTTACAGCTATGGTGTTGTACTTCTAGAGCTTTTGACTGGAAGAAAACCTATAGACATGTCACAATCTCCTGGACAAGAGAATCTTGTCGCTTGGGCTCGTCCACTTCTCACAAGTAAAGAAGGATTGGATGCAATGATAGATCCATCTCTTGGAGCTGATGTGCCTTTCGACAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTATCAAACCGTCCTTTCATGGGTGAGGTTGTGCAGGCTTTAAAACTTGTATGTAATGAATGTGATGAAGCAAAAGAAGAAACAGGCTCAAGAAGTTCTAGCCAGGAAGATTTATCTGTTGATTTAGATCTAGGAATCAGCACTGTTTCTGGTCAGCCACCAGATAATTTCCAAAGCCAATTCTCCCCTACTAACTTTGATTCTGGAGTTGACATTGAAAGAGGCTTGGCAGCATCAGAACTGTTCAGTTCATCAGCAAGATTTGGCAGGGTGGAGTCTGGATCATTTAGAAGAAACTCTTATTCAGGTCCTCTGAGAACCGGAAGAAGCCAAAAGTTGTGGCAGATAATTAGAAGTCTTTCTAGTGGCAGTGGCAGTGAACATGGAACAATGTTAAAGTCTGGTATCAGATGTGTGCAAAGTCTGGATTCTGATTTGCGAGTCAGCGAAGAGAGGGGTTTGCATTTGCACTCTGCACTTTGCTTAGCAGTTGAAGATCCGGTGTTGCAATCTCTGCATTCTGTAATGGCTCCAAAAGCAATAACGAGTCCGGTCCCCGATGCGTGGTACCCTGCACTCTCCGTCCTCACTCTCGTCATCGGCCTCCTCTTAACCGCCTCTTTCTTCATTTATGAAGCAACCTCTTCTAGGAAAAGTCGTTCACTTGCTCAGGAGCTGATAACTGGAGCAGTGGCGTCAGTGTTCTTGGGTTTTGGATCCTTGTTCCTCCTACTTGCTTGTGGCGTTTATGTCTAA 3702 0.4487 MVALALMLQLLKLYITGFAVTAQESNAFFPVIPPRVGTLGPIYHGEGSKAPNVPPDGDGFVISSSPASLHVYLSPSSPTMPNGPFLQPPKTFPPPTAAPTPQKIKDIEPFKSPSPSSIALSPPYEVVPSPSAVQGNKPPSVNTSPPQMKVPSVRPPVSTPTAPAPIAVNLTKESPVSQPPEHGVLAPIVHQRNASMGHNLEPAQPASVAIPPTTHKLKTMDREPTQHGSIPPNVHKSITNKGHTSEPVSPESVASPPRKVENNPPEAHPIVPTTTPSILPVASPTPLRSINWKKGGAPVVAPLSRNPKPFPAVIHSHAQAPAAQNAWQLHHAPEPLISPPKSPSNKEYHSPMMSPSTSFYKHPRTGEAIPPLLPPSSGQRHHAPPPMNSSSSISTSVSPLSSPIHSHMDQVSPANSPSIKFAPPPTRIPPSESSSKRPKMPILPQVQALPPPPPNEDCLSTVCTEPYTNSPPGEPCRCVWPMRIGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANAADQQPEKTVVLIDLVPLGGEFDNTTAFLTSDRFWHKKVLIKAFYFGDYDVLYVTYPGLPPSPPLRPSSLNIFDGGPYSTNGSNGGKIKPFGVDIQKKHHKGGLSRGIIAIIAVTVSLAVVLCASAAWFMIKFRDHVNQPVSTPRQLLPPSLTKEPGTAGSLRSGGVGSVSTSFRSSIAAYTGFAKTFGMNDIVKATDNFHVSRILGEGGFGRVYSGILEDGMEVAVKVLKREDHHGDREFLAEVEMLSRLHHRNLVKLVGICTEDSFRCLVYELIPNGSVESHLHGVDRENSPLDWGALMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEGDFTPKVSDFGLARTATDEENKHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPIDMSQSPGQENLVAWARPLLTSKEGLDAMIDPSLGADVPFDSVAKVAAIASMCVQPEVSNRPFMGEVVQALKLVCNECDEAKEETGSRSSSQEDLSVDLDLGISTVSGQPPDNFQSQFSPTNFDSGVDIERGLAASELFSSSARFGRVESGSFRRNSYSGPLRTGRSQKLWQIIRSLSSGSGSEHGTMLKSGIRCVQSLDSDLRVSEERGLHLHSALCLAVEDPVLQSLHSVMAPKAITSPVPDAWYPALSVLTLVIGLLLTASFFIYEATSSRKSRSLAQELITGAVASVFLGFGSLFLLLACGVYV 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02475 1233 MobiDBLite consensus disorder prediction 219 285 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 79 159 - -
Cca11g02475 1233 PANTHER OS01G0750732 PROTEIN 6 1115 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 133 148 - -
Cca11g02475 1233 Pfam Oligosaccharyltransferase subunit 5 1162 1233 IPR007915 GO:0006487|GO:0034998
Cca11g02475 1233 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 1115 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 81 100 - -
Cca11g02475 1233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Cca11g02475 1233 SUPERFAMILY Protein kinase-like (PK-like) 704 996 IPR011009 -
Cca11g02475 1233 Pfam Protein tyrosine and serine/threonine kinase 724 996 IPR001245 GO:0004672|GO:0006468
Cca11g02475 1233 MobiDBLite consensus disorder prediction 333 438 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 230 251 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 667 687 - -
Cca11g02475 1233 Gene3D Transferase(Phosphotransferase) domain 1 799 1022 - -
Cca11g02475 1233 Gene3D Phosphorylase Kinase; domain 1 696 798 - -
Cca11g02475 1233 ProSiteProfiles Protein kinase domain profile. 723 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02475 1233 CDD STKc_IRAK 729 997 - -
Cca11g02475 1233 MobiDBLite consensus disorder prediction 382 417 - -
Cca11g02475 1233 ProSitePatterns Protein kinases ATP-binding region signature. 729 751 IPR017441 GO:0005524
Cca11g02475 1233 MobiDBLite consensus disorder prediction 343 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02475 Cca-Chr11 51906436 51921824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02475 154 1119 Receptor kinase-like Gene Family AT5G56890 52.709 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca11g02475 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02475 - - ccaj:109808351 2099.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02475 11 51906436 51921824 Cca11g02475 11 51906436 51921824 ECH