Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02470 ATGATTCCAGCCTATCGCCATTCAGTATCTTCTGTTATGCCTCTGGATCTTAACGAAGATCAGAACCACGAACTCCTCAGTCCAAATCATCACGCATCCTCTTCCTTTTCTTCTCTATCATCATCCTACCCTATTCTCTTCAACCCGCCAGATCAAGATCAAGAAGCTCGATCATACTATTGGCAACCAACAGAAAAGAAAATACCAAGCGATCATGAAGAGGCTGAGAAGATTATCCCTCCTAGCGGATCACGGGATCAGTCGGTGGCAGAAAGTGAGCAGAAGGTGACAGTTTGGAAGAAAGAAGAGAGGAATGAAAATCTTGAAGCAGTTGCTGAGGATGGTTCGATGAACTGGATGTCTTCAAAGATGAGAATGACGCGGAAGATGGTGGTGTCGGATCAAACTGACGCATGTGTTGCAGACAACACTAGGCACAAGTTTGAAGATCAAAAGCAACCATTGTCACCGCTTGGAACTGATAATAGCAGCAGCAACAACTACTCAAACCATGGTAATAACACAGTTAGGGTTTGCGCTGACTGCCACACCACCAAGACCCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCTTGTGGGATTCGACAAAGGAAGGCAAGACGTGCCATGGCGGCGGCAGCAGCAGCAGCGGGAAATGGAACAGTTCTTGTGGAAGCTGAGAAATCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGTCAAGAATTGAGGGTGCCCCACAGATGAAAAAGAAGCGCAAGCTTGGAGCAAAGCCATCTCAAAGTAGAAGCAAGTTTGGCTTTGAGGATTTGACGCTACGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTCTATCTTATGGCCTTGTTCATGGATGA 939 0.4707 MIPAYRHSVSSVMPLDLNEDQNHELLSPNHHASSSFSSLSSSYPILFNPPDQDQEARSYYWQPTEKKIPSDHEEAEKIIPPSGSRDQSVAESEQKVTVWKKEERNENLEAVAEDGSMNWMSSKMRMTRKMVVSDQTDACVADNTRHKFEDQKQPLSPLGTDNSSSNNYSNHGNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAGNGTVLVEAEKSVKGNKLQKKEKKSRIEGAPQMKKKRKLGAKPSQSRSKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVHG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02470 312 SMART GATA_3 173 224 IPR000679 GO:0006355|GO:0043565
Cca11g02470 312 MobiDBLite consensus disorder prediction 145 169 - -
Cca11g02470 312 MobiDBLite consensus disorder prediction 238 257 - -
Cca11g02470 312 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 312 - -
Cca11g02470 312 MobiDBLite consensus disorder prediction 238 269 - -
Cca11g02470 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 213 - -
Cca11g02470 312 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 312 - -
Cca11g02470 312 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Cca11g02470 312 Gene3D - 174 269 IPR013088 GO:0006355|GO:0008270
Cca11g02470 312 MobiDBLite consensus disorder prediction 155 169 - -
Cca11g02470 312 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Cca11g02470 312 MobiDBLite consensus disorder prediction 65 96 - -
Cca11g02470 312 CDD ZnF_GATA 178 210 IPR000679 GO:0006355|GO:0043565
Cca11g02470 312 MobiDBLite consensus disorder prediction 66 80 - -
Cca11g02470 312 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02470 Cca-Chr11 51819788 51821658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02470 91 312 C2C2-Gata Transcription Factor Family AT4G26150 35.200 5.89e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca11g02470 GATA 4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02470 - - gmx:100810698 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02470 11 51819788 51821658 Cca11g02470 11 51819788 51821658 ECH
Cca11g02470 11 51819788 51821658 Cca08g01468 08 43548249 43550295 PCT