Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02462 ATGGCAATATTCACCAACACGGTTCAACCAGAATGCTTGCTTCTATTCCCAAGAATGCCCCGAAGAATACTCCAAGTCCAAGCAGAGGAGCCTCCTTCATCCTCTCTGGATTTAAATATCTCCCCGACACACCACGATGCTGGAATGTTCTTATTCCTCGGAGTGATTGCAGTGATCATCATGTTGCTGATTCTCGTGTTTATATTTTGGAGGCGAGTTAAACGGCCAGCAAAGGAGATGGAGAACACAGCCGTAGCAAGTAAACAGCATGAGGTGATGAAGATGATAGTCCCAAACATACAACAGTCAGGACCAATGGGGTTCTTTAGCGGAAACCTTAGGACAATTAGCTACTTTGACTTCCGGACATTAAGGAGAGCCACTACAAATTTCCATCCTCGAAATCTTCTTGGAAGTGGTGGATTTGGACCTGTCTATCAGGGAAAGTTGGCAGATGGAAGGCTTATTGCAGTCAAGACATTGTCTCTTGACAAGTCTCAACAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACCAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGTTGCACAGATGGCTCTCAAAGGATACTTGTGTACGAATACATGAAGAATAGAAGTTTGGACCTCATAATACATGGGAAGAGTGATCAATTTTTGAATTGGAGAACTAGATTCCAAATCATTCTTGGAGTAGCACGGGGATTGCAATACCTCCACGAGGACTCGCATTTAAGAATTGTTCACAGAGACATCAAAGCAAGCAACATTCTTCTTGACGAGAAGTTTCAGCCGAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTCAGTTCGCAGGAACATTAGGCTATACAGCTCCTGAGTATGCTATTAGAGGAGAATTATCCGAAAAGGCAGACATCTATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGCTGCAGGAAAAACACAGACCTTACTTTACCATCAGAAATGCAGTATCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGTTGATGGAAATAGTAGATCCAAAGCTGCGAGAACATGGAATAGTGGAAAAGGATGTCATGCAAGCATTCCACGTGGCCCTGTTATGCCTTCAGCCACACGCGGACTTAAGACCTGCCATGTCAGATATCGTGGCAATGTTGACATTCAAAGTTGAGATGATTTCAACACCAATGAGGCCAGCATTCCTTGATCGAAGGCGCGTGATGGATGATGAACACCACTCATGGGAAGCCGTATCAGAGGCTTTCACTACTGCAGTGGCAAGTGATTCTGCATCCCCACCTAAAGCTCCAATACTCTAG 1371 0.4413 MAIFTNTVQPECLLLFPRMPRRILQVQAEEPPSSSLDLNISPTHHDAGMFLFLGVIAVIIMLLILVFIFWRRVKRPAKEMENTAVASKQHEVMKMIVPNIQQSGPMGFFSGNLRTISYFDFRTLRRATTNFHPRNLLGSGGFGPVYQGKLADGRLIAVKTLSLDKSQQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGSQRILVYEYMKNRSLDLIIHGKSDQFLNWRTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPKLREHGIVEKDVMQAFHVALLCLQPHADLRPAMSDIVAMLTFKVEMISTPMRPAFLDRRRVMDDEHHSWEAVSEAFTTAVASDSASPPKAPIL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02462 456 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 110 417 - -
Cca11g02462 456 Gene3D Phosphorylase Kinase; domain 1 92 208 - -
Cca11g02462 456 SMART serkin_6 131 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02462 456 PANTHER RECEPTOR-LIKE KINASE 110 417 - -
Cca11g02462 456 Pfam Protein tyrosine and serine/threonine kinase 135 402 IPR001245 GO:0004672|GO:0006468
Cca11g02462 456 CDD STKc_IRAK 137 404 - -
Cca11g02462 456 Gene3D Transferase(Phosphotransferase) domain 1 209 412 - -
Cca11g02462 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Cca11g02462 456 SUPERFAMILY Protein kinase-like (PK-like) 110 406 IPR011009 -
Cca11g02462 456 ProSiteProfiles Protein kinase domain profile. 131 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02462 Cca-Chr11 51700534 51704689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02462 28 455 Receptor kinase-like Gene Family AT1G56120 39.953 1.35e-99 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca11g02462 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02462 - - ccaj:109792436 900.197