Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02459 ATGGAAAACGATGAAGAATGCATCACTGGGTTGTGTTTGGGACTGGGAATGGGAGGGCATGTTCCTAAAAGGGCTAAGCATAAAGAGAACAAGCCTGTGAAGTGCCTTGACCTAGCGTTTGAGCTTTGTCCAAAAGAAGAAGCCATGAACGTGAATCATAATATTGATTCTGATAACCCCAATGAAAAGAGCACCGATTCTGATaacagcaacaacaacaacaacaGCGGTTGCAGAAAGAAACTGAGGCTTTCCAAGGAGCAATCAGCCATGCTTGAGAACAGCTTCAAACTACATAGCACTCTTAATCCGGTTCAGAAACAAGCACTTGCTGATCAATTGAATTTAAAGGCTAGACAAGTTGAAGTTTGGTTTCAGAACCGAAGAGCAAGGACGAAGCTGAAACAGACAGAAGTGGACCGGGAGTTTTTGAAAAAGCACTGTCAAAATCTAAGTGATGAGAACAGACGATTGAAGAGGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCGTCGCAGTTATGCATTCAACTATCCAAAACTACGACTCTGACTATGTGTTCTTCGTGCGAGAAACTAGGAAAGAACAATATAGAGTTAGAGGGTAGAAATTAA 618 0.4094 MENDEECITGLCLGLGMGGHVPKRAKHKENKPVKCLDLAFELCPKEEAMNVNHNIDSDNPNEKSTDSDNSNNNNNSGCRKKLRLSKEQSAMLENSFKLHSTLNPVQKQALADQLNLKARQVEVWFQNRRARTKLKQTEVDREFLKKHCQNLSDENRRLKRELQELRALKVGPSQLCIQLSKTTTLTMCSSCEKLGKNNIELEGRN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02459 205 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Cca11g02459 205 PANTHER - 10 196 - -
Cca11g02459 205 SUPERFAMILY Homeodomain-like 64 136 IPR009057 -
Cca11g02459 205 Pfam Homeodomain 79 133 IPR001356 GO:0003677
Cca11g02459 205 SMART halz 135 178 IPR003106 GO:0006355|GO:0043565
Cca11g02459 205 MobiDBLite consensus disorder prediction 51 79 - -
Cca11g02459 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 196 - -
Cca11g02459 205 SMART HOX_1 77 139 IPR001356 GO:0003677
Cca11g02459 205 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Cca11g02459 205 MobiDBLite consensus disorder prediction 53 79 - -
Cca11g02459 205 Coils Coil 127 168 - -
Cca11g02459 205 CDD homeodomain 79 136 IPR001356 GO:0003677
Cca11g02459 205 Gene3D - 83 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02459 Cca-Chr11 51666156 51667907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02459 70 194 Homeobox Transcription Factor Family AT4G16780 67.200 3.27e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca11g02459 Homeodomain 5.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02459 K09338 - gmx:100812222 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02459 11 51666156 51667907 Cca08g01471 08 43610334 43611869 PCT