Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02454 ATGAAAGCAATACCCAGCAAGCTGAAGTTCTCCTTCTCCGTTGGTCTCCATTCGTTCTCCATTCCTTCTCCAATTCGTCTCTTCCCGGAAGCTCGGATTCCTTACACTGAGGTAAGattcGATCTCTACCACCATTGTCCTCCATCTCCGATCTCCATTGTTGCAGCTCCTTCGGGTTTTGGTTTCGGAATTGATTCAGAAGCTGCGAATATTTCAGTTATGGGAATCAGTAAAACAGAAATAAACTTGAGGAGGTTGCTTGCAGCTTCTCCTCAACAGCAAAACCAGGCAAAACTTATACATTATGTTGCTACTTTGCGTGAACAAGTGGAACAATTGGCTGATGAAAGGACACCGGAAGGCTTACCGAGGATTTCAAAGGCCACGTTGAATGATTATTCAGAGAAGATTGAAGCCATTGCTTCCAAATTGGTTAACCATGTGCCTGACCCAGAAGTATCCGAGAAGGACTTTGAAGGGAATTTTGTTAAAGAAAACCCTTCTGAAATTGAGGAAAAAAAGAAGATACCCCTTTCTTCTGGATTGAGAAGAAGGCCTGTACCGGCCTCTAGTACTGAAGATAGAGCACACGAGCCAGCTGAGACTGACCACACACCACATGTTAAACTGGATGCTACGGCACATGCTCACATTGAAAAGCACAGAAAGCTTCAAGATGATTTGACTGATGAGATGGTGGTATTGGCAAAGCAACTCAAAGAGAGTAGTCTCGTGATGAACCAATCCCTGAAAAACACTGAAAAGATACTTGATTCTACCGAGAAGGCTATTGAGCATAGCTTGGCAAGCACCGGTCGAGTCAATGTGCGAGCAAGCGCAATCTACTCGGAGAGTTCCAAGACTTCTTGCTTAACTTGGCTTGTCATGTTTGTGATGACATCAGCAATTAGCATTGCATTTTCTTGGAGAATTCTTGGAACCTTCCTTTGTTTACACGTGTCAACTGTCAAAAACAACTCAAACTCAATGGGAAATTGTTGGAGTCTTCAATCACGTTATCCCCCCGAGTCCAGTACTGCCCCCAACCCCAACAATCAATTAGGGAGTATTCAGTTTTCTTCTGGTCTCAGCAACGCAAGATTGATACAAAATGGCAATTCTACTTCTCTTGGTCATAGCAGCCACTCTGGAGGAATCAGCAGGTTATTTGGGCCAAGTAGTAGCAACAACTTCTCAACGGGCAATAACACTAGCACATCCCTTTGGGGCTCTGAGAATAGCCAAGCCTCTCGAGTCAGAGATGAAGAGGAGTTTCCTCAAGGGCAGATCTTGGATGTTGCAGACTTGAGAGCATTTACTTTGGCAGAATTGAGGGCTGCCACCAGAAATTTCAGAGCTGACACTTTGTTAGGTGAGGGGGGTTTTGGCAAAGTATTCAAGGGTTTGATTGAAGATAAAGCAGCAAAAAAAAGAGGTGAGGGGTTGACTATTGCCATCAAGAAATTGAATTCTGAAAGCAGGCAAGGAATTGCGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGACTTTCTCATCCCAACCTTGTTAAGTTGTTGGGATTCGGAAGAGAGGATAATGAGCTGTTTCTGGTGTATGAATTTATGCATCGTGGAAGCTTGGATAACCACCTATTTGGAAGAGGTGCAAATGTTCGGCCACTTTCTTGGGACACAAGGCTAAAGGTTATGATTGGAGCGGCAAGGGGACTGAATTTCCTTCATTCCTTGGAGAAGAAAATTATATATAGAGATGTCAAACCCTCAAATATACTAATTGACAAGACATATGCAGTAAAGTTATCGGACTTTGGCTTAGCCAGATCTGTTACTTCGCCTGATCAGAGTCACGTATCAACACAGGTTATGGGGACTCACGGCTATGCTGCTCCTGAATACATAGCAACAGGCCATTTGTATGTGAAAAGTGACGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACTGGCAAAAGGATAAATGATATATTGCGGCTGAGTGAGAAAACGTCCTTGAGGGATTGGCTAAAATCAAATCTACTAAATAGAGGGAAAATAAGAAGCTCTATGGATGCAAAGTTGGAAGGAAAGTATCCAAACAACTTAGCTTTGCAAGTAGCTGAACTAGCTCTCAAATGCATACAAGCAGAGCCCAAAGTGAGGCCATCAATGAAAGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGCAGAAAACGGGTTACTCGTTCCCGGCCAGTTCAACAACATGGCCAGCCAGAGCCAGATAGTGgcatctttggTGGCCTAGTGGAGTTGAGCTTGTACAGTATGCATACACATATGCCAAAAGGATCTGGGAATGCATTTGGCTTTGGGGTAAAGCCCCGAGGGAGAAAGAGGCTTCAAACTAGGCTGACCCCTAGTATATTGATAAACAAGAAGGTAATGTCAACAAGTTGCCTCCTTCAAGTTGATCTTTATTAA 2490 0.4337 MKAIPSKLKFSFSVGLHSFSIPSPIRLFPEARIPYTEVRFDLYHHCPPSPISIVAAPSGFGFGIDSEAANISVMGISKTEINLRRLLAASPQQQNQAKLIHYVATLREQVEQLADERTPEGLPRISKATLNDYSEKIEAIASKLVNHVPDPEVSEKDFEGNFVKENPSEIEEKKKIPLSSGLRRRPVPASSTEDRAHEPAETDHTPHVKLDATAHAHIEKHRKLQDDLTDEMVVLAKQLKESSLVMNQSLKNTEKILDSTEKAIEHSLASTGRVNVRASAIYSESSKTSCLTWLVMFVMTSAISIAFSWRILGTFLCLHVSTVKNNSNSMGNCWSLQSRYPPESSTAPNPNNQLGSIQFSSGLSNARLIQNGNSTSLGHSSHSGGISRLFGPSSSNNFSTGNNTSTSLWGSENSQASRVRDEEEFPQGQILDVADLRAFTLAELRAATRNFRADTLLGEGGFGKVFKGLIEDKAAKKRGEGLTIAIKKLNSESRQGIAEWQSEVNFLGRLSHPNLVKLLGFGREDNELFLVYEFMHRGSLDNHLFGRGANVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDVKPSNILIDKTYAVKLSDFGLARSVTSPDQSHVSTQVMGTHGYAAPEYIATGHLYVKSDVYGFGIVLVEVLTGKRINDILRLSEKTSLRDWLKSNLLNRGKIRSSMDAKLEGKYPNNLALQVAELALKCIQAEPKVRPSMKEVVETLEQIEAANEKPADNSRKRVTRSRPVQQHGQPEPDSGIFGGLVELSLYSMHTHMPKGSGNAFGFGVKPRGRKRLQTRLTPSILINKKVMSTSCLLQVDLY 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02454 829 CDD STKc_IRAK 457 734 - -
Cca11g02454 829 CDD SNARE_USE1 221 279 - -
Cca11g02454 829 SMART serkin_6 451 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02454 829 PANTHER OS01G0588500 PROTEIN-RELATED 338 762 - -
Cca11g02454 829 ProSiteProfiles Protein kinase domain profile. 451 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02454 829 Gene3D Phosphorylase Kinase; domain 1 435 534 - -
Cca11g02454 829 Pfam Protein tyrosine and serine/threonine kinase 454 731 IPR001245 GO:0004672|GO:0006468
Cca11g02454 829 ProSitePatterns Protein kinases ATP-binding region signature. 457 488 IPR017441 GO:0005524
Cca11g02454 829 SUPERFAMILY Protein kinase-like (PK-like) 432 731 IPR011009 -
Cca11g02454 829 MobiDBLite consensus disorder prediction 188 204 - -
Cca11g02454 829 MobiDBLite consensus disorder prediction 735 767 - -
Cca11g02454 829 Pfam Membrane fusion protein Use1 78 300 IPR019150 -
Cca11g02454 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Cca11g02454 829 MobiDBLite consensus disorder prediction 162 179 - -
Cca11g02454 829 Gene3D Transferase(Phosphotransferase) domain 1 535 758 - -
Cca11g02454 829 MobiDBLite consensus disorder prediction 162 204 - -
Cca11g02454 829 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 338 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02454 Cca-Chr11 51601938 51621118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02454 428 739 Receptor kinase-like Gene Family AT4G02010 42.222 3.07e-76 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca11g02454 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02454 - - gmx:100813304 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02454 11 51601938 51621118 Cca11g02454 11 51601938 51621118 ECH