Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02452 ATGCACAATCTCGCAGGGGTTGCCATGGAAGAGAACATACCCATACAAGAAGCAGCTTCCGCTGGCTTGAAGAGCATGGAGCATCTCATTCGTCTCCTttcttcttctgcttcttcttcttcttcttcttcttcttcttcttcttcCTCACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACCCAGATCACCGACTTCACCGTCTCCAAGTTCAAACAAGTCATCAACCTCTTGAATCGCACCGGTCATGCTCGCTTTCGTCGTGCACCTTCACAACCTCAGCCCCAAACACTAACTCTTCATTTTGCAAATCCCAACTCTTCTACCCAACCCTCTACCTCTAAGACCAAGGAAGCCTCCACCTTTAGCATATCCCCTCccatgtccatgtccatgtccatgtccatgtccaCCACCACCTCCTCCTTCATCTCCTCCATCACCGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCTTCCTCCCTCCCAAACCCCCTCTCTCCTCCTCCCACCGCAAAAGATGCCACGACGCCACCCTCTCTTCCTCCGCAAACTGCCATTGCTCCAAGAGAAGgaaatCTCGTGTGAAAAGAATGATTCGTGTGCCGGCGATAAGTTCGAAGATGGCTGATATCCCAGCGGACGAGTACTCATGGAGAAAGTACGGTCAAAAGCCCATCAAGGGATCACCCTACCCACGGTATTTTTCTATTCTTCCCTCCCAACCCTACCTAGTACCTACTATCATGCTTCTTTCTTCCTCCCAAATTAATTAG 786 0.4644 MHNLAGVAMEENIPIQEAASAGLKSMEHLIRLLSSSASSSSSSSSSSSSSHHHRLNLNHLDCTQITDFTVSKFKQVINLLNRTGHARFRRAPSQPQPQTLTLHFANPNSSTQPSTSKTKEASTFSISPPMSMSMSMSMSTTTSSFISSITADGSVSDGKIGPFLPPKPPLSSSHRKRCHDATLSSSANCHCSKRRKSRVKRMIRVPAISSKMADIPADEYSWRKYGQKPIKGSPYPRYFSILPSQPYLVPTIMLLSSSQIN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02452 261 MobiDBLite consensus disorder prediction 92 130 - -
Cca11g02452 261 Pfam Plant zinc cluster domain 175 214 IPR018872 -
Cca11g02452 261 MobiDBLite consensus disorder prediction 89 130 - -
Cca11g02452 261 Gene3D WRKY domain 195 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02452 261 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 238 IPR044810 GO:0003700
Cca11g02452 261 SMART WRKY_cls 216 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02452 261 Pfam WRKY DNA -binding domain 218 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02452 261 ProSiteProfiles WRKY domain profile. 211 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02452 261 SUPERFAMILY WRKY DNA-binding domain 214 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02452 261 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 6 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02452 Cca-Chr11 51575459 51577115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02452 9 237 WRKY Transcription Factor Family AT4G31550 45.055 4.44e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g02452 Plant_zn_clust 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02452 - - ccaj:109810982 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02452 11 51575459 51577115 Cca11g02452 11 51575459 51577115 ECH
Cca06g01486 06 29812427 29814704 Cca11g02452 11 51575459 51577115 PCT
Cca11g02452 11 51575459 51577115 Cca08g01476 08 43679069 43680323 PCT