Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02446 ATGTTTTCTATACTTCCATTGCTCAGCTACTTTTCATTTCTTGTATCTATTATAAGATGTTATTCTGACTGCAATTTGCTGCAAACGTTACATACACATTGCTCAAGGATAAACAGTTCAACCATCTTTCTGTTTTGCAGAGGAAGACGAAGACCAGAATACACCTATTTCCATCAGAGTAATCTCGTTTTCGGAAGTATGAGTTTCTCCAAGGGCTCTCCCGGCGGCCAGACGCCGCGTGATATAGAGGCTGGGTCTCCCCGTAGCTTCTCTGCTGATTTTGATGATGGAGACTTTTCCTCTGATCCCTTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCGGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAGGAGAAGAAACGAGTATTAAGAATTGTTATAGTGCATACACGAGCCATTCAAGCCGCATATCGTTTCAAGGCAGCTGGGCAAATGAATGGAACTATAAAACCTCATTCAGGCTCCACTGGGGAATTTTCAATTGGACAAGAGCAACTCTCTTCAATTTCAAGGGACCGTGACATTTCTGCTCTGCAGGAAAAAGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAAGAGGGAATTCAAGGTGATGATGATGACTTGATTAAACGGAGGAATGCATTCGGGTCCAACAACTACCCTCGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAATGGCTTCATTAGTACTAGGGATAAAATCTGAGGGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGCGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAGCACAAGAGAAACATACATTTGGAGGTTATTCGGGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTCGGTGATGTTATTCCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAGTTTTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAGATTGTCGATAAAAATTCCAATGATCCTTTTTTAATTTCTGGATGTAAAGTTGCGGACGGCAGTGGCAATATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGACTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTGTGGTTCTGCTGGTGCTACTGGCCAGATATTTCTCTGGAAATACTAGAAACACAGATGGAAGTATTCAATTTATAGCGGGCAAGACCAAAGTTGGGGATGCCATTGATGGAGCAATTAAGATTGTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTCCCTTTAGCAGTTACCTTAACTCTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAATCATTTGCAGTGACAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTTCTCCTCCTCACGATAAATCACAGTTCTCTCCTACGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGGAGTGTTTATGCTCATGAGGGACGTAATGATGTTGAGGTTTCTGGCTCACCAACAGAAAAGGCAATTTTAGAGTGGGGAATTCGGCTTGAAATGGATTTTAAGGCTGCCAGATCAAAATCATCAATTATTCATGTCTTCCCATTCAATTCAGACAAAAAGCGTGGGGGAGTTGCAATACAGATGCCCGACTCTTCAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACAAAGTATATGGATGCAAATGGTCAAAGGATGAAGATGGATGAAGCGCAGATGACGGCTTTTAAAAAAACTATTGAAGACATGGCTGCTGATAGTCTACGTTGTATTGCCATTGCATATAGATCATATGAAAAGGAGAATGTTCCAACTAGCGAAGAAGAACTTGCCCACTGGTCATTACCAGAGGATGATCTTGTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCAGCTTTGCAAAAAGGCTGGAGTTGAGTTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAAAGCAATTGCTATGGAATGTGGAATACTTTCAATTTCTGATGCCACAGAGACAACCATCATCGAAGGAAAAGTATTTCGATCCATGACAGATGAAAGGAGAGCAGAAATCGTTGAAAAGATATTGGTTATGGGGCGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGAAACGGACATGTTGTGGCTGTAACCGGAGACGGAACAAATGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGCACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTAGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGATCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGTTATAAATGTTGTTGCAGCATTTTCCACCGGTGATATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACCAATGAACTGATGGATCAACATCCAATGGGTCGAAGAGAACCTCTTGTGTCAAATATTATGTGGAGGAATCTGCTAATGCAGGCAATGTACCAAGTGTCTGTCTTGCTTATACTTAATTTCCGAGGGACAAGCATACTGGGTTTGAGGGATGAGCCCAACCGCTCTGCAATCAAAGTGAAAAACACTCTGATATTCAACGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAACTCAACATATTCAACGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAGTAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTGACTTGGAAGCAGTGGCTCATTTCTGTTATTATAGGATTTATCAGCTGGCCTCTTGCGGTGGTTGGAAAACGGATACCAGTACCAAAGGCTCAACTCAGTAACTTTTTCCGAAAATGTCTTCAACACTGTAACATTTTCCGAAGATGTCTTCCTGAATGA 3441 0.4205 MFSILPLLSYFSFLVSIIRCYSDCNLLQTLHTHCSRINSSTIFLFCRGRRRPEYTYFHQSNLVFGSMSFSKGSPGGQTPRDIEAGSPRSFSADFDDGDFSSDPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKAAGQMNGTIKPHSGSTGEFSIGQEQLSSISRDRDISALQEKGGVVGLSHLLKTNLEEGIQGDDDDLIKRRNAFGSNNYPRKSGRSFLMFMWDACKDLTLVILMVAAMASLVLGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVDKNSNDPFLISGCKVADGSGNMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVVVLLVLLARYFSGNTRNTDGSIQFIAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATIICSDKTGTLTMNQMTVVEACIGGKKISPPHDKSQFSPTLCSLLIEGVAQNTNGSVYAHEGRNDVEVSGSPTEKAILEWGIRLEMDFKAARSKSSIIHVFPFNSDKKRGGVAIQMPDSSIHIHWKGAAEIVLACCTKYMDANGQRMKMDEAQMTAFKKTIEDMAADSLRCIAIAYRSYEKENVPTSEEELAHWSLPEDDLVLLAIIGLKDPCRPGVKDAVQLCKKAGVELKMVTGDNVKTAKAIAMECGILSISDATETTIIEGKVFRSMTDERRAEIVEKILVMGRSSPNDKLLLVQALRRNGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTNELMDQHPMGRREPLVSNIMWRNLLMQAMYQVSVLLILNFRGTSILGLRDEPNRSAIKVKNTLIFNAFVLCQVFNEFNARKPDKLNIFNGVTRNYLFMGIVGVTVVLQIVIIEFLGKFTKTVKLTWKQWLISVIIGFISWPLAVVGKRIPVPKAQLSNFFRKCLQHCNIFRRCLPE 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02446 1146 ProSitePatterns E1-E2 ATPases phosphorylation site. 552 558 IPR018303 -
Cca11g02446 1146 Gene3D - 547 902 IPR023214 -
Cca11g02446 1146 PANTHER CATION TRANSPORTING ATPASE 95 1136 - -
Cca11g02446 1146 Gene3D - 258 1108 - -
Cca11g02446 1146 SFLD p-type atpase 532 909 IPR044492 -
Cca11g02446 1146 Gene3D - 231 426 - -
Cca11g02446 1146 Pfam Cation transporter/ATPase, N-terminus 208 274 IPR004014 -
Cca11g02446 1146 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 557 755 IPR023299 GO:0000166
Cca11g02446 1146 Pfam Cation transporting ATPase, C-terminus 942 1117 IPR006068 -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 374 388 - -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 550 564 - -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 751 762 - -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 773 783 - -
Cca11g02446 1146 PRINTS P-type cation-transporting ATPase superfamily signature 881 893 - -
Cca11g02446 1146 Pfam Ca2+-ATPase N terminal autoinhibitory domain 101 144 IPR024750 GO:0005516
Cca11g02446 1146 Gene3D - 560 758 IPR023299 GO:0000166
Cca11g02446 1146 Gene3D - 113 167 - -
Cca11g02446 1146 PRINTS H+-transporting ATPase (proton pump) signature 703 721 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02446 1146 PRINTS H+-transporting ATPase (proton pump) signature 857 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02446 1146 PRINTS H+-transporting ATPase (proton pump) signature 889 914 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02446 1146 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 824 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02446 1146 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 491 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02446 1146 SFLD C1.7: P-type atpase like 532 909 - -
Cca11g02446 1146 SUPERFAMILY Calcium ATPase, transmembrane domain M 209 1121 IPR023298 -
Cca11g02446 1146 CDD P-type_ATPase_Ca_PMCA-like 234 990 - -
Cca11g02446 1146 Pfam haloacid dehalogenase-like hydrolase 548 871 - -
Cca11g02446 1146 SUPERFAMILY Calcium ATPase, transduction domain A 328 423 IPR008250 -
Cca11g02446 1146 PANTHER CALCIUM-TRANSPORTING ATPASE 95 1136 - -
Cca11g02446 1146 SUPERFAMILY HAD-like 548 962 IPR036412 -
Cca11g02446 1146 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 198 1121 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca11g02446 1146 Pfam E1-E2 ATPase 328 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02446 Cca-Chr11 51500671 51525226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02446 73 1131 Primary Pumps ATPases AT4G29900 70.273 0.0 1514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02446 K01537 - gmx:100790157 1828.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02446 11 51500671 51525226 Cca11g02446 11 51500671 51525226 ECH
Cca11g02446 11 51500671 51525226 Cca08g01481 08 43767178 43782063 PCT