Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02439 ATGGAGAATTTTGGTGAGGAGTACAAAAATTACTGGGAGAACATGTTTTTCCCAAGCGAAGACCTTGACGGTTGGGCAATGGATCATGAGGGCTTCTCCGGGTACTATGATTCAAGTTCCCCGGACGGTGGGGCTTCATCGGCGGCAGCTAAGAACATTGTGTCGGAGAGGAATAGGAGGAAGAAGCTGGACGAAAGGCTTTATGCACTTAGAGCTGTGGTCCCCAACATTAGCAAGTTGGATAAGGCTTCTATCATTAAGGACGCTATAGAGTACATCCACCACTTGCATGAGGAAGAGAAGAGAATCCAAGCCGAGATTTTGGATCTTCAGTCTCAGAACCTCAAAAACCCAACCTACGACTTTCAGCAGTACCTCCCAATTTTGCTCAGGTCTAAGAAGACCAGAACTCAACACCTCCTTCACTCTTCCACTTCACCTATTCAACTTATTGGGCTGAAAGTAACACATATGGCAGAAAAGACGTTTGTGGTGAGCTTGACATGTAACAAAAGGACAGATACAATGGTAAAACTGTGCGAGGTCTTCGAATCTTTAAAGCTGAAGGTCATTACAGCCAATATCTCTTCTTTTTCAGGCACGCTTTTGAAGACTGTCTTCATCCAGGCAGATGAGGAAGAGAAAGATATTTTGCAGAATAAAATTGAGACAGCCATTTCAGCTCTCAATGATCCTCAGAGCCCAATGAGTATCTGA 717 0.4435 MENFGEEYKNYWENMFFPSEDLDGWAMDHEGFSGYYDSSSPDGGASSAAAKNIVSERNRRKKLDERLYALRAVVPNISKLDKASIIKDAIEYIHHLHEEEKRIQAEILDLQSQNLKNPTYDFQQYLPILLRSKKTRTQHLLHSSTSPIQLIGLKVTHMAEKTFVVSLTCNKRTDTMVKLCEVFESLKLKVITANISSFSGTLLKTVFIQADEEEKDILQNKIETAISALNDPQSPMSI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02439 238 Coils Coil 93 113 - -
Cca11g02439 238 Gene3D - 45 114 IPR036638 GO:0046983
Cca11g02439 238 Coils Coil 208 228 - -
Cca11g02439 238 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Cca11g02439 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Cca11g02439 238 SMART finulus 53 102 IPR011598 GO:0046983
Cca11g02439 238 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 232 - -
Cca11g02439 238 PANTHER TRANSCRIPTION FACTOR BHLH35 1 232 - -
Cca11g02439 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02439 Cca-Chr11 51348075 51354535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02439 6 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.373 7.91e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g02439 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02439 - - gmx:100803916 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02439 11 51348075 51354535 Cca11g02439 11 51348075 51354535 ECH
Cca11g02439 11 51348075 51354535 Cca08g01496 08 44186542 44194006 PCT