Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02435 ATGTCTTCGTGTTTAAGCGGAGCAGGGGGAAGAACCTACGGTTTCGATTTCGAATTCGTTAAATCTCCATCTTCCCCCACCAGAAACTCCCACACATCTTCTTCACCGTCCTCAACAATCTCCGAATCCAGCAATTCGGCGGCGCTAGCTATCTCCACCAAGAAACCCAGAACTCCGCGAAAGCGACCCAACCAAACCTACAATGAAGCCGCGGCGCTTCTCTCCACGGCCTACCCGAACCTCTTCTCCCCCAAGAACCTCAAGACGCACGGCAGAGGAAAATTCACGCGGCCCACATCGGAGAATTTCGATTACGACTCTTCCGAGCTCCTGTTGCCGTTCAGAGTTTTCGACGGCTCCTCGTCGTGTTTCCTTCTGGACCAAATGGGCCCCAAGCCCACGGAGAGGCCCAAAGTGGTGAGCGTGTGCGAGAGCCCCGGGGAGATAAGCTCCGTCGCCAAATTGAATTGCCTTGAACTGAACGACGACGACGTTTGCCAAGAGAGCCTCGACGCCGAATCGATTCTCGACGAGGAAATTGAGGAAGGGATGGATAGCATCATGGGAGGGACCATCATCCAAGAGGAATCCAACGACGCCGTTCGCAACGTCCTAATGGCCTTCGAGTTCGCCAGACCGCGCGTTAGGGCTCTGCGCCACGTCGACCACGCAAACTGCTGGAACTTTCCCACCGTCGATATTCTCCAGATATCGCCCAAAATTAAGCCTCCGCCGCTCGCCGCCGACAAGAAGACCAAGAAGAAGAAGCTGGCGGAGAAAGAGAAACCGGTGATGGAGTTTAGAAACGTCGAATTGCCCAAACCCAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTCCGGAGCGCTTGGTCCGACCGCGGCACTCCCTTCGCCGACGATAGCCCCCTCGCCGACGCGCCGGAAAATGACGTCGCTGCGCGGTTGTCGCAGATTGATTTGTGGTGGGACAACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAAGAGAAGCGGCGAACACGCCTCTTCTCAAAGAAGATCAGATACCAGGTGAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGGACGGTTTGTTAGGAGGCTCAATTCTAGTTCGAATGCACACAGATGA 1149 0.5474 MSSCLSGAGGRTYGFDFEFVKSPSSPTRNSHTSSSPSSTISESSNSAALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSPKNLKTHGRGKFTRPTSENFDYDSSELLLPFRVFDGSSSCFLLDQMGPKPTERPKVVSVCESPGEISSVAKLNCLELNDDDVCQESLDAESILDEEIEEGMDSIMGGTIIQEESNDAVRNVLMAFEFARPRVRALRHVDHANCWNFPTVDILQISPKIKPPPLAADKKTKKKKLAEKEKPVMEFRNVELPKPKQGLMLKLNYDDVRSAWSDRGTPFADDSPLADAPENDVAARLSQIDLWWDNNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02435 382 MobiDBLite consensus disorder prediction 22 64 - -
Cca11g02435 382 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 377 - -
Cca11g02435 382 PANTHER OS02G0148000 PROTEIN 1 377 - -
Cca11g02435 382 ProSiteProfiles CCT domain profile. 331 373 IPR010402 GO:0005515
Cca11g02435 382 MobiDBLite consensus disorder prediction 22 52 - -
Cca11g02435 382 Pfam CCT motif 331 372 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02435 Cca-Chr11 51308479 51311575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02435 276 373 C2C2-CO-like Transcription Factor Family AT1G25440 46.341 1.26e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca11g02435 CCT 7.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02435 - - gmx:100810303 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02435 11 51308479 51311575 Cca11g02435 11 51308479 51311575 ECH
Cca11g02435 11 51308479 51311575 Cca08g01499 08 44316916 44320405 PCT