Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02433 ATGGGGGACAGTGAGAAGAAATTAAACAACAAAGGATCTAAAAAATCCAGTCATTTGAAGGCAGGTACGAAGTGCAAAGGGAAGAAGGATAAAGTGAAAGTAGTATCAAAATCTCACACAAAAAATGTTGGCACTGACATATCGAGGAAGAGAGTTACCGACTCTTCCTCCAAGGTCAAAGGGCCGCGTAAGGATTCTTCACATAAGAAATTGATTACTGGAAAAAATTTGCCTGCAAAAAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACAAGGCAAAAAAACTTCTCTTAGCTCCAGAAAAGAGGGGAAAGATGCAGATGGGGTGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAAAGAAGAAAAGGCAAAGGAATAATGTAGATCTTGATGATCCTTTGCGCTTTCAGAGGAGAACAAGGTATCTTTTAATCAAAATGAAACTAGAGCAGAACCTGATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGTTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCTCTTGGTTCATTGAGTAGCATCGAAGATTCTGCCATTGCTCCGGATGGATCTATTTACCATGGAAATATATTTTGTGCAAAGTGCAAGATGCATGAAGAACATCCTGATAACGATATTATACTTTGTGATGGTACATGCAAGCGTGCTTTTCATCAAAAATGTCTAGACCCTCCTTTAGACACAGAAAATATTCCTCCTGGAGAGCAGGGCTGGTTTTGTAAATTTTGTGACTGTAAGATGGAAATACTGGAGGCAATGAATGCTCATCTTGGAACTCACTTCTCCTTACATAGTACTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTATTGAATCCTGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACTATATCCACACAGAAGGAACTGATGATGGTGTATCTGATGATTTAAGCAGTTCTACAAGTCTGTGTTCTTCTGATGGTGAATGTTATCCAGTAGATGGTTTTAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGAAAAAGCCTGTGGGCGTCGGCAGCGAAAAGCTGTTGACTACAAAAAACTTTATGATGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAGTTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCACGAAAGTGAGAATAAGCACCCTAATTATGAGCATAACAACATTACAAGAAAAGATTCTTCAAGTGCAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGGTCTACCCGAGAGGGTCTTTCTAAAGAGCTGGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGcatcaagcagcagaaggagcagcagatcagcTTCAAAGTATCACTTCTACTAAGAACTCCAGATTACAAAATCAGGAGAATGCTGATCTTTTGAAACCAAAGACCTTGAAAATTACAATGACACATTCCCAGAAGAATGTTAAAAATGTCACTGGAAGAAAGAAAATAAAATCATCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCGCCAGGAGAAAATGGCAACAAGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAGAAAAGAAAGAGGTTGGTAAATTTTAAATTTGAAGGAGACTCTCAGGCGGCAGAGATGGAATTTGAAAGACTAAGCAAATTGAAGATTAAAATAGATAGTATGAAGCAAAAATTAGCTGCAATTCAAAATTACAGAGTAGAGGGTTCAAATGAACCCCCTAATTCTAATGAACCATCCATTGTATATGTACCAACAGCTGTGTTAAGGGAAAAAGGTTGA 2115 0.3835 MGDSEKKLNNKGSKKSSHLKAGTKCKGKKDKVKVVSKSHTKNVGTDISRKRVTDSSSKVKGPRKDSSHKKLITGKNLPAKNRKSSQKPSSKLQGKKTSLSSRKEGKDADGVVKLQKMKRKRKKKRQRNNVDLDDPLRFQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPDGSIYHGNIFCAKCKMHEEHPDNDIILCDGTCKRAFHQKCLDPPLDTENIPPGEQGWFCKFCDCKMEILEAMNAHLGTHFSLHSTWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHYIHTEGTDDGVSDDLSSSTSLCSSDGECYPVDGFSHEYFSVNSSIDSDESEEKACGRRQRKAVDYKKLYDEMFGKDAPAYEQLSEDEDWGPGKRKRREKESDAVDSLMTLHESENKHPNYEHNNITRKDSSSANIRRHCFRIPRDAVEKLRQVFAENELPPRSTREGLSKELGLDTEKVSKWFKNARYLALKNRKHQAAEGAADQLQSITSTKNSRLQNQENADLLKPKTLKITMTHSQKNVKNVTGRKKIKSSSKKRQPEIPPPPGENGNKDFMEISDDVSLKKLLKKRKRLVNFKFEGDSQAAEMEFERLSKLKIKIDSMKQKLAAIQNYRVEGSNEPPNSNEPSIVYVPTAVLREKG 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02433 704 MobiDBLite consensus disorder prediction 322 336 - -
Cca11g02433 704 ProSiteProfiles Zinc finger PHD-type profile. 223 280 IPR019787 -
Cca11g02433 704 CDD PHD_PRHA_like 225 277 IPR045876 -
Cca11g02433 704 CDD homeodomain 485 541 IPR001356 GO:0003677
Cca11g02433 704 MobiDBLite consensus disorder prediction 97 114 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 78 96 - -
Cca11g02433 704 ProSitePatterns Zinc finger PHD-type signature. 226 277 IPR019786 -
Cca11g02433 704 MobiDBLite consensus disorder prediction 43 71 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 544 567 - -
Cca11g02433 704 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 8 675 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 337 354 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 423 468 - -
Cca11g02433 704 ProSiteProfiles 'Homeobox' domain profile. 477 537 IPR001356 GO:0003677
Cca11g02433 704 SUPERFAMILY FYVE/PHD zinc finger 219 283 IPR011011 -
Cca11g02433 704 SMART HOX_1 479 541 IPR001356 GO:0003677
Cca11g02433 704 Pfam Homeodomain 488 532 IPR001356 GO:0003677
Cca11g02433 704 SMART PHD_3 225 278 IPR001965 -
Cca11g02433 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 274 IPR013083 -
Cca11g02433 704 Gene3D - 461 544 - -
Cca11g02433 704 PANTHER POLYCOMB PROTEIN PCL 8 675 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 1 133 - -
Cca11g02433 704 SUPERFAMILY Homeodomain-like 475 539 IPR009057 -
Cca11g02433 704 MobiDBLite consensus disorder prediction 583 618 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 13 35 - -
Cca11g02433 704 Coils Coil 656 676 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 317 362 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 547 567 - -
Cca11g02433 704 MobiDBLite consensus disorder prediction 423 475 - -
Cca11g02433 704 Pfam PHD-finger 225 280 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02433 Cca-Chr11 51294040 51299540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02433 128 548 Homeobox Transcription Factor Family AT4G29940 57.944 2.26e-158 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Cca11g02433 Homeodomain 3.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02433 - - gmx:100817639 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02433 11 51294040 51299540 Cca11g02433 11 51294040 51299540 ECH