Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02424 ATGTCTCTTAAGGAGAAGAGCAAGGAGGGGAAGAAATTTGAGAAGAGCTATTTCGATGTGTTGGGTTTGTGCTGTTCTTCGGAGGTGCCACTGATTGAGAACATCCTGAAACCTCTCGAAGGAATCAAAGAGGTTTCTGTCATCGTCCCATCACGAACTGTCATTGTTGTTCACGACACTCTTGTCATTTCTCAACTTCAAATAGTTAAGGCTCTGAATCAAGCAAGACTAGAAGCGAATATTAGAGTGTATGGGGACTCAAAGCACCAAAAGAGATGGCCAAGCCCTTACTCGGTTGTGTCTGGTTTGCTACTTTTGCTTTCGCTTCTCAAATTTGTGTGCCATCCCTTTAAGTATTTGGCCCTTGGAGCAGTTGCTGTGGGAGCCTACCCTATCATCTTGAAAGCTATTTTCTCCATTAGGAACCTTAGGCTTGACATCAACATTCTCATGATCATAGCAGTTATTGGGACAATTGCTATGAATGATTATTTGGAAGCCGGCACCATTGTTTTCCTCTTCTCAATTGCTGAATGGCTAGAGTCAAGGGCAAGTCACAAGGCAAATGCAGTAATGTCATCTTTGATGAACATAACCCCTCAAAAAGCAGTCATAGCTGAAACAGGAGAGGTTGTGGATGCTGATGAGGTGAAAGTAAACACCATCCTTGCAGTTAAAGCAGGCGAGGTCATACCCATTGATGGACTTGTCTTAGATGGAACCTGCGAAGTTGACGAGAAAACATTGACTGGGGAATCATTCCCTGTCGCTAAACAAAAGGATTCTACTGTATGGGCTGGCACCATCAATTTGAATGGTTATATTAGTGTCAAAACTACTTCACTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAGCTTGTTGAAGAAGCTCAGAACAGCAAAACCAGCATTCAGAGATTGATTGACAAGTTTGCCCAGTTTTATACCCCAGCTGTTGTGATCATATCAGCTCTTATAGCGCTGATTCCAGTAGCGTTAAGAGTGCATAACGAGAAACACTGGCTTCACTTTGCACTGGTTGTTCTAGTAAGTGCATGTCCATGCGCACTTATCCTTTCAACGCCGGTTGCAACTTTTTGTGCTTATACGAGAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTGACTATCTTGAAACGCTTGCTAAAATTAAGGTCATTGCCTTTGACAAAACGGGTACGATAACCAAGGGTGAATTTCTGGTGACGCATTTTCAGTCTCTATCAGATGACATTGATTTCAACACATTGCTTTACTGGGTGTCAAGCGTAGAGAGCAAGTCAAGCCATCCTTTGGCAGCAGCAATTGTTGATTATGGAAGGACACTCTCTGTTGAACCACAGCCTGAAAAGGTGACAGAATTTGAAAATTTTCCTGGAGAAGGAATATGTGGGAAAATTGAAGACAGAGTTCTTTACATTGGAAACAAAAAAATTGCTGCAAGAGCTGGGTCTGAAACAGTTCCAATCATACAAGGGGAAATTGAAAGAGGAAAGACCACTGGATACATATACTTGGGAGCAACCCCAGTTGGATTTTTCTCTCTTTCAGATGCTTGCAGATTAGGGGTTCAGGAGGCAATAGGGCAGTTGAAGTCATTGGGAATCAAAACTGCTATGCTCACTGgagatagtcaatctgctgcaatgcaagcacaggagcagCTGGGGCATTCTCTGGAGTTAGTCCATGCAGAACTTTTGCCAGAGGACAAGGTGAAAATCATCTCAGAATTTAAGAATGAAGGTCCAACAGCCATGATTGGAGATGGTGTAAATGACGCGCCGGCATTAGCTGTAGCTGATATAGGAATCTCAATGGGCATTTCTGGTTCTGCATTGGCAAGTGAGACAGGAAACATAATTCTCATGTCAAATGACATTAGGAAGATACCAGAAGCCATCAAGCTTGCAAGAAAGTCTCGTAGGAAAGTGGTAGAAAACATTATTTTGTCCATCATTACTAAGGCTGCGATTCTTGGTTTGGCCATTGGTGGTCATCCACTTGTTTGGGCAGCAGTTGTTGCTGATGTTGGAACATGCCTATTGGTCATCTTTAACAGCATGTTACTTCTGAGAAGAGGTCACAATCATGGAGGAAAATGTAGATCTTCCTCTAAACCAAATATCCACAAAAGTGGATGTGGTGGCACTAATGGTTGCTCCTCTCatcatcatcatgatcaacaccaacaccaacaccaacaccaacatgatcatgatcaacatcaacatcaaagccataagggttgttgctcagacaagactgaaaatgcgtctcaacctaagaaatgtggtggcactcatggtagttcctctcatcaccatcatcatcatcatcatgatcaacatcaacatcatacccataaccaacatgatcaacatcatcatcatcatagccatgatcataatcaacatcatagccataaccaacatgatgaattccacgaacatgatcactgtcatcatGGAAGGTGTGACAAGAATCAAGATGGAGTCCAGAAGCATGACACTGAAAACAAGGGTTGCTCAGATTCACACAATTTGATTCTGAATGCAGAAGATAATGGTGCAGCAGCAGTTGCAACAAACAGGCATGGTAATTGTTCGGGACATAAGGCTCATCATGGGACAAAACACTGCCATAACCAAAATGTTGACATGGTTACTCATGATGGAGCTTCACTAAGATCTCCTTGCAACCTCAATCTCTCTTGTCAAAAGGAAAGTCATCAAGTTACTCATAACCATTGCCACCTGATCCATGGTTGTGAAAATCTGAAAGACCATGAAGAATCCAAAGATGTTTTAGCATCCAATCATGTCATTCAGCATGAACAATCAGGTGAAATATCGATTGACATTGACAATGATCATGGTGAATTAGCTTCAATGCATGGTTGTTCAAGTTTGAAAGAGAAAGAAAAGGATTCCTGCTATGAAGGCTGCACAGACACATGCGAGAAATTGCCTGTTGTGTGTGTTGGCTGTGAGAATTCAAATGAGAGAGAAGACGGTGCATGTTGCAGAAATGATGGCTCTTCAAAAGAGTGTCAGGAATCTCCTATTATGCACGTATGTCTTAGTTTGGAAAAGAGAGAAGTTGGAGGATGTTGCAAGAGCTATATGAAGGAATGTTGTCGCAACCTTGGACACTCAAGAGCTGGTTTTGTAGGAGGTTTATCTGAAATTATTACAGAATAG 3228 0.3792 MSLKEKSKEGKKFEKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVVHDTLVISQLQIVKALNQARLEANIRVYGDSKHQKRWPSPYSVVSGLLLLLSLLKFVCHPFKYLALGAVAVGAYPIILKAIFSIRNLRLDINILMIIAVIGTIAMNDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMNITPQKAVIAETGEVVDADEVKVNTILAVKAGEVIPIDGLVLDGTCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTSLAEDCVVAKMAKLVEEAQNSKTSIQRLIDKFAQFYTPAVVIISALIALIPVALRVHNEKHWLHFALVVLVSACPCALILSTPVATFCAYTRAATSGLLIKGGDYLETLAKIKVIAFDKTGTITKGEFLVTHFQSLSDDIDFNTLLYWVSSVESKSSHPLAAAIVDYGRTLSVEPQPEKVTEFENFPGEGICGKIEDRVLYIGNKKIAARAGSETVPIIQGEIERGKTTGYIYLGATPVGFFSLSDACRLGVQEAIGQLKSLGIKTAMLTGDSQSAAMQAQEQLGHSLELVHAELLPEDKVKIISEFKNEGPTAMIGDGVNDAPALAVADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARKSRRKVVENIILSIITKAAILGLAIGGHPLVWAAVVADVGTCLLVIFNSMLLLRRGHNHGGKCRSSSKPNIHKSGCGGTNGCSSHHHHDQHQHQHQHQHDHDQHQHQSHKGCCSDKTENASQPKKCGGTHGSSSHHHHHHHHDQHQHHTHNQHDQHHHHHSHDHNQHHSHNQHDEFHEHDHCHHGRCDKNQDGVQKHDTENKGCSDSHNLILNAEDNGAAAVATNRHGNCSGHKAHHGTKHCHNQNVDMVTHDGASLRSPCNLNLSCQKESHQVTHNHCHLIHGCENLKDHEESKDVLASNHVIQHEQSGEISIDIDNDHGELASMHGCSSLKEKEKDSCYEGCTDTCEKLPVVCVGCENSNEREDGACCRNDGSSKECQESPIMHVCLSLEKREVGGCCKSYMKECCRNLGHSRAGFVGGLSEIITE 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02424 1075 MobiDBLite consensus disorder prediction 710 730 - -
Cca11g02424 1075 Gene3D - 407 528 IPR023299 GO:0000166
Cca11g02424 1075 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 147 699 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca11g02424 1075 MobiDBLite consensus disorder prediction 761 776 - -
Cca11g02424 1075 SUPERFAMILY Calcium ATPase, transduction domain A 210 295 IPR008250 -
Cca11g02424 1075 PRINTS Copper-transporting ATPase signature 187 205 - -
Cca11g02424 1075 PRINTS Copper-transporting ATPase signature 318 332 - -
Cca11g02424 1075 PRINTS Copper-transporting ATPase signature 574 591 - -
Cca11g02424 1075 PRINTS Copper-transporting ATPase signature 631 645 - -
Cca11g02424 1075 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 147 701 - -
Cca11g02424 1075 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Cca11g02424 1075 SUPERFAMILY HMA, heavy metal-associated domain 12 80 IPR036163 GO:0046872
Cca11g02424 1075 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 5 765 - -
Cca11g02424 1075 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 390 IPR023298 -
Cca11g02424 1075 CDD P-type_ATPase_HM 120 698 - -
Cca11g02424 1075 SFLD Haloacid Dehalogenase 379 648 - -
Cca11g02424 1075 Pfam E1-E2 ATPase 206 374 - -
Cca11g02424 1075 Gene3D - 10 83 - -
Cca11g02424 1075 Gene3D - 185 299 - -
Cca11g02424 1075 SFLD p-type atpase 379 648 IPR044492 -
Cca11g02424 1075 MobiDBLite consensus disorder prediction 777 813 - -
Cca11g02424 1075 Coils Coil 291 311 - -
Cca11g02424 1075 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Cca11g02424 1075 MobiDBLite consensus disorder prediction 742 760 - -
Cca11g02424 1075 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 5 765 - -
Cca11g02424 1075 PRINTS P-type cation-transporting ATPase superfamily signature 245 259 - -
Cca11g02424 1075 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Cca11g02424 1075 PRINTS P-type cation-transporting ATPase superfamily signature 542 552 - -
Cca11g02424 1075 PRINTS P-type cation-transporting ATPase superfamily signature 596 615 - -
Cca11g02424 1075 PRINTS P-type cation-transporting ATPase superfamily signature 620 632 - -
Cca11g02424 1075 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 170 673 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02424 1075 ProSitePatterns Hypothetical cof family signature 2. 596 618 - -
Cca11g02424 1075 MobiDBLite consensus disorder prediction 704 850 - -
Cca11g02424 1075 Pfam haloacid dehalogenase-like hydrolase 392 610 - -
Cca11g02424 1075 MobiDBLite consensus disorder prediction 814 850 - -
Cca11g02424 1075 Gene3D - 387 647 IPR023214 -
Cca11g02424 1075 SUPERFAMILY HAD-like 394 697 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02424 Cca-Chr11 51156435 51166751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02424 11 900 Primary Pumps ATPases AT4G30110 57.203 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02424 K01534 - gmx:100817567 1623.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02424 11 51156435 51166751 Cca11g02424 11 51156435 51166751 ECH