Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02419 ATGGCAGTAACCTTCAAAGCTTGCAACACCGTGAGGCCTATAGAGCCATCATTGCACGAACGTGTCCCTTTATCTGAATTGGATCAAATAGGCACCATAACCCACGTCCCCATAATCTACTTCTACCGTCCCCAACAAAACTGGCTCTCCCACAATAATTCCACCATGGCTTCCACCTTGAAGGACTCACTAAGCCGAGTCCTGGTGCCGTTTTACCCCCTAGCCGGTCGTTTACACTGGATAAACAACGGTCGTTTAGAGCTTGAATGCAACGATAAGGGTGTTCAGTTCGTGGAAGCGGAGTCAACGTCAAGTTTTGAAGATCTCGGTGACTTTTCACCTTCTTCAGAGTACCACCACCTTGTCCCCAAAGTAGACTACAGTCTCCCCATTCACGAGCTTCCCTTGGTGCAGGTTCAGCTTACGAGGTTCAAATGCGGTGGCATCAGCATCAGCTTAAACATCTCACACGCCGTGGCGGACGGGCCCAGCGCGATGCACTTCACGTGCGAGTGGGCCAGGCTCGCACGTGGGGAGAGTCTCGGAATGGCACCGTTTCTCGACTGGAGAGTGCTGCGTGCGGGGGAGCCTCCTTTGGCACTGGTGCCCCCCGCAACATGCCACGTGCACACGGCGTTCGAGCACCCTCCGTTGTTGCTAGGCCAAACCGGGAACACCGAGGAACGAAAGAAGAAAACAACAGTGGCGATTCTGAAACTGAGTAAAATCCAGGTTGAGACGTTGAAAAAGACAGCGAATGAGAGCTGGGGAAAAGCTAGTAACGGTCGCGGTTATAGCCGTTACGAGAGTGTGACTGGGCACGTGTGGAGAAGTGCATGCAAGGCGAGGGGGCACAGAGAGGAGCAACCTACGGCGCTTGGCGTTTGCGTTGACTCGAGGTGTCGCATGCAGCCACCTTTGCCGAAAGGGTATTTCGGGAATGCGACTTTGGATGTTGTTGCTACTAGTTTGGCTGGTGATTTGGTTTCGAAGCCGTTGGGGTATGCCGCGAGTAGGATAAGGGAAGCGATTGAGAGGGTGAATGACGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAGAGGCAAGATGATTTGAGTAGGTTTCAGGATCTTTATGCGATTGGGAGTGAGAAGGGGCCTTTTTATGGGAACCCTAATTTGGGTGTGGTTAGTTGGTTGAGTTTGCCCATCTATGGCCTTGACTTTGGGTGGGGTAAGGAGGTTTATATGGGTCCTGGGACGCACGACTTTGATGGGGATTCTCTGCTTCTTCCTGGTCCAGATGGGGATGGCTCTTTGCTGCTTGCTTTGTGTCTTCAAGTGCTGCATATGGATGCCTTCAAGAACCATTTTTATCAAGATATTCTGTAA 1371 0.5186 MAVTFKACNTVRPIEPSLHERVPLSELDQIGTITHVPIIYFYRPQQNWLSHNNSTMASTLKDSLSRVLVPFYPLAGRLHWINNGRLELECNDKGVQFVEAESTSSFEDLGDFSPSSEYHHLVPKVDYSLPIHELPLVQVQLTRFKCGGISISLNISHAVADGPSAMHFTCEWARLARGESLGMAPFLDWRVLRAGEPPLALVPPATCHVHTAFEHPPLLLGQTGNTEERKKKTTVAILKLSKIQVETLKKTANESWGKASNGRGYSRYESVTGHVWRSACKARGHREEQPTALGVCVDSRCRMQPPLPKGYFGNATLDVVATSLAGDLVSKPLGYAASRIREAIERVNDEYVRSGIEFLKRQDDLSRFQDLYAIGSEKGPFYGNPNLGVVSWLSLPIYGLDFGWGKEVYMGPGTHDFDGDSLLLPGPDGDGSLLLALCLQVLHMDAFKNHFYQDIL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02419 456 SUPERFAMILY CoA-dependent acyltransferases 20 185 - -
Cca11g02419 456 Gene3D - 222 454 IPR023213 -
Cca11g02419 456 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 455 - -
Cca11g02419 456 Pfam Transferase family 1 453 - -
Cca11g02419 456 Gene3D - 1 210 IPR023213 -
Cca11g02419 456 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02419 Cca-Chr11 51083944 51085359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02419 1 453 Monolignol Biosynthesis Gene Families AT5G48930 39.956 8.86e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02419 K13065 - gmx:100777007 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02419 11 51083944 51085359 Cca11g02419 11 51083944 51085359 ECH