Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02417 ATGGCAGTGAGCTTAAAAGGCTGTTACACCGTGAAGCCTTGGGAGAAAACATGGTGCGGACGCTTAGCTTTATCCGAATTGGATCAAACAGGACAAGTAACCCACGTTCCCACACTCTACTTCTACCACCCCCCAGAAAACTGCATGTACTCCACCATTGCTTCCACCTTGAGAGACTCACTGAGCCGAGTCCTGGTGCCGTTTTATACCCTAGCCGGTCGTTTACACTGGATAAACAACGGTCGTTTAGAGCTCCATTGCAACGCCTCGGGGGTTTCCTTCATTGAAGCCGAATCCTCATCGAGTTTACAACATCTCAGAGACGACTTTAACTTGTACCACCTCCTTTTTCCCACCGTGGACTACACGCTCCCAATTCACCAAAATCCGTTGCTTCTGATTCAGCTAACGAGGTTCTCCTGCGGCGGCGTCAGCATCGGCATCACGATTTCGCACGTGGTGGTGGACGGAACCAGCGCCTCGCACTTCGTTTGCGAGTGGGCGAGGCTGGCGCGCGGGGAGCCTCTGCAAACGGCGCCGTTTCATGACCAGAAGGTGCTGCGCGGCGGGGAGCCTCCTTCGGTGCCGCTAACGGAATGCGACGTGCACGCGGAGTTCGATCGCCCTCCGTTGCTGCTCGGGAAAAACGACAACGCCGAGGAAAGGAAGAAGAAAACGACGATGGCTGTTCTGGAACTGAGCAAAACGCAAGTTGAGACGTTGAGAAAGAGAGCGAATGGCAATTATAGCCGTTACGAGAGTGTAGCTGGTCACATATGGAGAAGTGCATGCATGGCTAGAGGGCTTAAAGAGGAGCAACCAACCCTGATTAGTATCACCATTGACTTGAGGCGTCGCATGAAACCACCTTTGCCAGAAGGGTATTTTGGGAATGCGATTTTGGACGCAGTTGCTTCTGGCCTTGTGGGTGATTTGGTGTTGAAGCCGTTGGGGTATGCGTGTAGTATAATAAGGGCTGCGATTGAGAAAGTGAATGATGAGTACGTTAGGTCGGGGATTGAGTTTCTGAAGAATCAAGAGGATTTGCGTAGGTTTCATAAGGATTCTATTGCGCAAGGGAGTGAGAACGAGGCTTTCTATGGGAACCCTAATTTGGGTGTGGTTAGTTGGTTGACTTTGCCCTTATTTGGCGTTGACTTTGGGTGGGGAAAGGAGGTTTATATGAGACCAGCAGCACATGCCTTCGAGGGAGAGTTTCTTCTTCTTCCTTGTCCAGATGGGGATGGATCTTTTGTGGTTGCTTTAGGTCTGCAAGTGGAGCATATGGATGCGTTTAAGAAGATTTTTTACCAGGACATTGAAGGCGAGGTTTGCGTTTCACTGCCTTCAGAGGCTTCCTTTCAGGCTTTCAAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTTCCATCCCCCAGTCTTCTTATGGAAAATTTTTCACTGGTGACTCTTATTTGATCTTGAAGACATTCGCTTCAAAAGGTGGTGCTCTGCGTCATGATATCCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTACTGCAGCCATCAAGGCAGTCGAGTTGGATGCATCTCTAGGAGGACGGGCTGTTCAGTATCGTGAAGTACAGGGTCATGAAACTGAAAAGTTCATGTCTTATTTCAAACCATGTATCATACCTCAAGAAGGTGGAGCTGCCTCGGGTTTTAAACATGTTGAGGCTGAAGAACATAAGACAAGGTTGTTTGTATGCAGAGGGAAACATGTGGTACAAGTTCCTTTTGCTCGATCTTCACTGAACCATGATGATATTTTTATTCTGGATACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTCTACAGTATATTAAGGACACCTACCATGATGGGAAATGTGAGATAGCTTCTATTGAGGATGGAAAGTTGATGTCTGATTCTGAAACTGGAGAATTCTGGGCATGTTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGCCAGTAATGATGATAAGCCTGGTGGTTCTCATCCTCCAAAGCTACTTTGTGTTGAAAAGGGGAAGGCAGAACCTATAAATACTGATTCTTTGACAAAGGAGTTACTGGACACAAATAAATGCTATATTCTAGATTGTGGGTTAGAAGTTTTTGCATGGATGGGAAGAAACACATCACTTGATGGAAGAAAAAGTGCAAGTGGAGCTGCAGATGAGTTTGTCAAAGGCACTGGTCGACCAAAGTGCCATATAATTCGTGTCATTGAAGGATTTGAAACAGTAATGTTCAGGTCCAAGTTTGATTCTTGGCCTCAGGGCACTCATGGAACAATGCCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGTCAAGGATTGGATGTCAAGGGTCTTGTGAAATCTGAGCCTGCAAAAGAAGAACCTCAACCCTACATAGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAATGGTCAGGAAAAGGTTCTCCTTCCACCCGATGATCAGTCAAAATTTTATAATGGAGATTGTTACATCTTTCAATATTCATATCCTGGAGAAGATAGGGAAGAGTATCTTGTAGGAACATGGATTGGAAAGACGAGTGTTGAGGGAGAGAGAGCTTCAGCTCTTTCACAAGCAAGCAAAATGTTTGAGTCGATGAAGTTTCTTCCTGCCCAGGCTCGTATCTATGAAGGAAGCGAACCAATTCAATTTCATGCCGTCCTCCAAAGCTGTATTGTTTTTAAGGGTGGACTGAGTGATGGATACAAGAATCACATTGCGGAGAACGGAATTCCAGATAAGACATACAGTGAGGATGGTGTTGCATTATTCCGCATCCAGGGCACTGGACCAGAAAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCTCTTATTGTTACATACTTCATAGCGGGCCCACTGTTTTTTCTTGGTCTGGAGGTTTAACAACTTCAGACGATCACGAGCTTGTTGAGAGAATGCTGGATTTGATTAAGCCGGATTTCCAATGCAAATCACAAAAGGAAGGTGTAGAATCGGAACAGTTTTGGGATCTGTTGGGAGGAAAATCAGAATATCCCAGTCAAAAGATCACGAGGGATGCTGAAAATGATCCTCACCTATTTTCTTGCGACTTCTCAAATGTATTTGGATTTATTCTGCCGCAGTGCATTAATCTGAAGCCATGCTTGCAGGTGAAAGAGATATACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTACATCATGGATTGTCACTCTGAAATCTTTGTCTGGGTGGGACAGCAGGTTGACTTAAAGAGTAGAATGCAAGCTCTAACAATTGGTGAGAAATTCCTTGAGCATGACTTTCTTCTAGAAAAATTATCTCGTGAAGCTCCAATATATGTTGTTATGGAAAACAGCGAGCCACCTTTCTTCACCCGCTTCTTTAATTGGGAGTCTGCAAAATCAGCAATGCTGGGAAACTCATTTCAAAGGAAGCTTGCAATCGTGAAAAATGGGGGGACGCCACCTTTGGTTAAACCTAAACGAAGAGCAGCAGTATCTTATGGAGGAAGGTCTGGTGGTATGCCAGACAAATCTCAGCGTTCCCGCAGCGTGTCTGTCAGTGCTGATCGTGTCCGAGTGAGGGGCAGATCTCCAGCCTTCAACGCACTAGCAGCTAATTTTGAGAGCCCAAATACTAGGAATCTCTCAACCCCACCTCCAATGGTTAGAAAACTGTACCCAAAATCTGTGACACCAGATACAACAAGACTGGCACCTAAATCTTCAGCCATATCTCGTCTTACTTCTAGTTTTGAACAACCATTTGTACGAGACAATTTGATTCCCCGCTCACAAAGAGGGAGTTCAGCTTCCCGCAAATCCAACGCTGATTCAAGTGACGAGGAAAGTTCTATGAGCAGCAGAATAGAATCTCTTACCATTCAGGAGGATGCCAAAGAGGGTGAAACTGAAGATGATGAAGGTCTCCCAGTTTACCCATATGAACGCGTTAACACAGCTTCTACAAATCCTTTAGCAGATATTGACGTGACTAAACGAGAGGCTTATCTGTCATCTGCAGAGTTCCAAGAGAAACTTGGGATGGCTAAGGATGAATTTTACAATTGCAGTAAGAAACTAAACATACGGAAGTGA 4227 0.4519 MAVSLKGCYTVKPWEKTWCGRLALSELDQTGQVTHVPTLYFYHPPENCMYSTIASTLRDSLSRVLVPFYTLAGRLHWINNGRLELHCNASGVSFIEAESSSSLQHLRDDFNLYHLLFPTVDYTLPIHQNPLLLIQLTRFSCGGVSIGITISHVVVDGTSASHFVCEWARLARGEPLQTAPFHDQKVLRGGEPPSVPLTECDVHAEFDRPPLLLGKNDNAEERKKKTTMAVLELSKTQVETLRKRANGNYSRYESVAGHIWRSACMARGLKEEQPTLISITIDLRRRMKPPLPEGYFGNAILDAVASGLVGDLVLKPLGYACSIIRAAIEKVNDEYVRSGIEFLKNQEDLRRFHKDSIAQGSENEAFYGNPNLGVVSWLTLPLFGVDFGWGKEVYMRPAAHAFEGEFLLLPCPDGDGSFVVALGLQVEHMDAFKKIFYQDIEGEVCVSLPSEASFQAFKGAGQKAGLEIWRIENFNPVSIPQSSYGKFFTGDSYLILKTFASKGGALRHDIHYWLGKDTSQDEAGTAAIKAVELDASLGGRAVQYREVQGHETEKFMSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCRGKHVVQVPFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVLQYIKDTYHDGKCEIASIEDGKLMSDSETGEFWACFGGFAPLPRKTASNDDKPGGSHPPKLLCVEKGKAEPINTDSLTKELLDTNKCYILDCGLEVFAWMGRNTSLDGRKSASGAADEFVKGTGRPKCHIIRVIEGFETVMFRSKFDSWPQGTHGTMPEDGRGKVAALLKRQGLDVKGLVKSEPAKEEPQPYIDCTGHLQVWRVNGQEKVLLPPDDQSKFYNGDCYIFQYSYPGEDREEYLVGTWIGKTSVEGERASALSQASKMFESMKFLPAQARIYEGSEPIQFHAVLQSCIVFKGGLSDGYKNHIAENGIPDKTYSEDGVALFRIQGTGPENMQAIQVEPVASSLNSSYCYILHSGPTVFSWSGGLTTSDDHELVERMLDLIKPDFQCKSQKEGVESEQFWDLLGGKSEYPSQKITRDAENDPHLFSCDFSNVFGFILPQCINLKPCLQVKEIYNFSQDDLMTEDIYIMDCHSEIFVWVGQQVDLKSRMQALTIGEKFLEHDFLLEKLSREAPIYVVMENSEPPFFTRFFNWESAKSAMLGNSFQRKLAIVKNGGTPPLVKPKRRAAVSYGGRSGGMPDKSQRSRSVSVSADRVRVRGRSPAFNALAANFESPNTRNLSTPPPMVRKLYPKSVTPDTTRLAPKSSAISRLTSSFEQPFVRDNLIPRSQRGSSASRKSNADSSDEESSMSSRIESLTIQEDAKEGETEDDEGLPVYPYERVNTASTNPLADIDVTKREAYLSSAEFQEKLGMAKDEFYNCSKKLNIRK 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02417 1408 SUPERFAMILY CoA-dependent acyltransferases 55 178 - -
Cca11g02417 1408 Gene3D Severin 690 796 IPR029006 -
Cca11g02417 1408 MobiDBLite consensus disorder prediction 1306 1336 - -
Cca11g02417 1408 PANTHER VILLIN-3-LIKE 455 1403 - -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 824 970 - -
Cca11g02417 1408 CDD gelsolin_S5_like 959 1050 - -
Cca11g02417 1408 Pfam Transferase family 2 437 - -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 456 592 - -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 665 797 - -
Cca11g02417 1408 Gene3D Severin 964 1055 IPR029006 -
Cca11g02417 1408 Gene3D - 213 439 IPR023213 -
Cca11g02417 1408 Gene3D Severin 578 689 IPR029006 -
Cca11g02417 1408 ProSiteProfiles Headpiece (HP) domain profile. 1350 1408 IPR003128 GO:0003779|GO:0007010
Cca11g02417 1408 PANTHER VILLIN 455 1403 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 1099 1121 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 765 786 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 878 896 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 974 994 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 853 869 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 1128 1147 IPR007122 GO:0051015
Cca11g02417 1408 PRINTS Gelsolin family signature 911 931 IPR007122 GO:0051015
Cca11g02417 1408 MobiDBLite consensus disorder prediction 1209 1233 - -
Cca11g02417 1408 SUPERFAMILY VHP, Villin headpiece domain 1341 1400 IPR036886 GO:0003779|GO:0007010
Cca11g02417 1408 MobiDBLite consensus disorder prediction 1299 1360 - -
Cca11g02417 1408 CDD gelsolin_S1_like 457 569 - -
Cca11g02417 1408 Pfam Gelsolin repeat 474 556 IPR007123 -
Cca11g02417 1408 Pfam Gelsolin repeat 594 658 IPR007123 -
Cca11g02417 1408 Pfam Gelsolin repeat 713 779 IPR007123 -
Cca11g02417 1408 Pfam Gelsolin repeat 1095 1167 IPR007123 -
Cca11g02417 1408 CDD gelsolin_S2_like 583 674 - -
Cca11g02417 1408 Gene3D Villin headpiece domain 1353 1407 IPR036886 GO:0003779|GO:0007010
Cca11g02417 1408 SMART VILL_6 834 931 IPR007122 GO:0051015
Cca11g02417 1408 SMART VILL_6 1078 1174 IPR007122 GO:0051015
Cca11g02417 1408 SMART VILL_6 584 676 IPR007122 GO:0051015
Cca11g02417 1408 SMART VILL_6 464 562 IPR007122 GO:0051015
Cca11g02417 1408 SMART VILL_6 961 1048 IPR007122 GO:0051015
Cca11g02417 1408 SMART VILL_6 696 786 IPR007122 GO:0051015
Cca11g02417 1408 MobiDBLite consensus disorder prediction 1253 1286 - -
Cca11g02417 1408 CDD gelsolin_S6_like 1063 1173 - -
Cca11g02417 1408 Gene3D Severin 452 577 IPR029006 -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 583 681 - -
Cca11g02417 1408 CDD gelsolin_S3_like 696 785 - -
Cca11g02417 1408 Gene3D Severin 1056 1189 IPR029006 -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 1037 1172 - -
Cca11g02417 1408 CDD gelsolin_S4_like 828 924 - -
Cca11g02417 1408 Gene3D Severin 828 963 IPR029006 -
Cca11g02417 1408 SUPERFAMILY Actin depolymerizing proteins 953 1057 - -
Cca11g02417 1408 Gene3D - 1 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02417 Cca-Chr11 51050764 51069576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02417 1 438 Monolignol Biosynthesis Gene Families AT5G48930 36.547 2.78e-93 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02417 - - gmx:100807762 1606.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02417 11 51050764 51069576 Cca11g02417 11 51050764 51069576 ECH
Cca08g01525 08 45135134 45152509 Cca11g02417 11 51050764 51069576 PCT