Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02411 ATGGAAGGGCAAGTGGCTAAACGCAGACGTGTATACTCTGTGAAACCAAACCAAATAGCGCAATTTATATTCACTAGAAATTATTTGAACCATTTAGTTCCAGCGTTGGTGAAGATAAAGGAAACAAAATCTAAAGAAGATAACAGCCACTGTGATATTAACAATGCTGTAAAGTATGAAGTGGACATGGCGATGGTGTTGTCAGCACAAGGTTTTGCATGGAGTAAGGGCCTTAAAGCCAAGCTTCAAAGCGATCATGTCAATGCAGATAAAACCACTTGTGAAGGTTCATCAAAGATTTATGATAAAAGTGAGGTTGTCCCAATGGAATATTTCTCTTCAAACCCTAGCTCAAAGTCCAAAGTGGAGGTTTTGGGGAGCAAGTCTAAGTGCATGGACATGTCAGAAACGAAAAGGGATTTAGGCATagaagatgatgaagatgaggacatgaagaagcagtggaagaGACTGAGAAGGTTGGTACCTGGAGGAGAAGAGATGTGTGATGAACAAATGGCTGCAGAGCTTCAGAGTTACATCAGCTGTTTGCAAATGCAGGTGAATGCTCTTCAGTTTCTACTGCCAGAGACAAGTTGA 600 0.3833 MEGQVAKRRRVYSVKPNQIAQFIFTRNYLNHLVPALVKIKETKSKEDNSHCDINNAVKYEVDMAMVLSAQGFAWSKGLKAKLQSDHVNADKTTCEGSSKIYDKSEVVPMEYFSSNPSSKSKVEVLGSKSKCMDMSETKRDLGIEDDEDEDMKKQWKRLRRLVPGGEEMCDEQMAAELQSYISCLQMQVNALQFLLPETS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02411 199 PANTHER TRANSCRIPTION FACTOR BHLH146 2 197 - -
Cca11g02411 199 CDD bHLH_AtIBH1_like 140 195 IPR044549 GO:0006355
Cca11g02411 199 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 2 197 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02411 Cca-Chr11 50988540 50989578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02411 1 82 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 46.988 1.42e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02411 - - gmx:100813719 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02411 11 50988540 50989578 Cca08g01530 08 45233522 45238866 PCT