Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02410 ATGGCGGCTGACAAGCCAGCAATCACCCTCGACGAAATCAAGAATGAGACCGTTGATCTGGAACGTATTCCTATTGAAGAAGTGTTCCAACAGTTGAAATGTACCAGAGAGGGATTGTCTGCAGACGAAGGAGCCAATCGGCTTCAACTATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAGATACTCAAGTTTCTTGGGTTCATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCAGCTATTATGGCAATTGCTCTTGCAAATGGAGAAGGGAAGCCCCCAGATTGGCAAGATTTTGTTGGTATTGTTTGCTTGTTGGTGATCAACTCCACCATCAGTTTCATCGAAGatatagaagggaAAAATAATGCTGGTAATGCTGCTGCTGCTCTTATGGCCGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGACCGAGCAAGAAGCTTCTATTCTAGTTGATCAATCTGCTTTGACCGGAGAGTCACTTCCTGTGACCAAGAATCCTGGAGATGAAGTTTTCTCTGGCTCAACATGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGTTGGTATGCTGGCTGAGATCATAGTCATGTACCCCATTCAGCACCGCAAGTACAGAGATGGAATTGACAACCTTTTGGTTCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCTGTCACAATGGCCATTGGCTCTCACAGGCTCTCTCAGCAAGGTGCTATCACCAAGAGAATGACTGCCATTGAAGAAATGGCTGGTATGGATGTCCTTTGCAGTGACAAGACAGGTACACTAACACTCAACAAGCTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGCTAAGGGTGTGGACAAGGACCATGTGATCCTTCTTGCTGCAAGGGCCTCCAGAACAGAAAACCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCTGGTGTAAGAGAGGTGCACTTCTTACCATTTAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCTGATGGAAATTGGCACCGGGCAAGCAAAGGCGCTCCTGAGCAGATCATGACCCTTTGTAACCTTAGAGAAGATGCAAAGAAGAAGGTCCACGCTATTATTGACAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTCCCTGAGAAAACAAAAGAAAGCGATGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTCGACCCCCCTAGACATGACAGTGCTGAAACTATTCGTAGAGCTCTCCATCTTGGTGTCAATGTCAAGATGATTACTGGTGATCAACTTGCCATAGCTAAGGAGACAGGTCGAAGACTTGGTATGGGAACTAATATGTACCCATCTGCTTCCTTGCTTGGTCAAGACAAAGATGTAAGTATTGCTGCACTTCCAGTAGAAGAGCTGATTGAGAAAGCAGATGGTTTTGCTGGAGTATTTCCAGAGCACAAATATGAAATTGTGAAGAAGTTGCAAGAGAGGAAGCACATCTGTGGAATGACCGGAGATGGTGTCAACGATGCTCCGGCTTTGAAGAAGGCTGATATTGGAATAGCTGTTGCTGATGCAACTGATGCTGCAAGAAGTGCTTCTGATATTGTCTTGACAGAACCTGGTTTGAGTGTTATTATTAGTGCGGTCTTAACTAGCAGGGCTATTTTCCAGAGAATGAAAAACTACACGATATATGCAGTATCCATCACCATCCGTATAGTGTTTGGCTTCATGTTCATAGCACTGATCTGGAAATTCGACTTCTCCCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTGAAGCCGTCTCCCTTGCCTGATAGCTGGAAACTGCAAGAAATATTTGCTACTGGAATTGTACTTGGAGGTTACTTGGCACTGATGACTGTCATATTCTTCTGGGCAATGAAAGAAACCGATTTCTTCCCTGACAAATTTGGAGTTAGACACCTGACTCATGACGAAATGATGTCTGCTTTGTATTTACAAGTCAGTATAGTAAGCCAGGCCTTGATATTTGTAACTCGTTCTCGAAGTTGGTCCTTTGTTGAACGCCCTGGATTGCTGTTAGTTACTGCTTTCATTATTGCTCAGCTGATTGCTACAATCATAGCAGTATATGCCAACTGGGGGTTTGCAAAGGTCAAAGGAATTGGATGGGGTTGGGCAGGAGTCATCTGGCTCTACAGTGTTGTCTTCTACATTCCACTTGATATCATGAAGTTTGCCATCCGTTACATATTGAGTGGCAAGGCTTGGCTCAACCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGAAAGGAAGAGAGGGAAGCTCAGTGGGCTCATGCTCAGAGGACCCTGCATGGTCTTCAACCACCAGAAACTTCCGGCATTTTCAATGAGAAGAACAGTTATAGAGAACTCTCTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGTGAGCTTCACACACTCAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTTTGGACATTGATACAATCCAGCAGCACTACACAGTGTGA 2679 0.4461 MAADKPAITLDEIKNETVDLERIPIEEVFQQLKCTREGLSADEGANRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGEGKPPDWQDFVGIVCLLVINSTISFIEDIEGKNNAGNAAAALMAGLAPKTKVLRDGKWTEQEASILVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMTLCNLREDAKKKVHAIIDKFAERGLRSLAVARQEVPEKTKESDGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDVSIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGIVLGGYLALMTVIFFWAMKETDFFPDKFGVRHLTHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVTAFIIAQLIATIIAVYANWGFAKVKGIGWGWAGVIWLYSVVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPETSGIFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02410 892 SFLD Haloacid Dehalogenase 254 582 - -
Cca11g02410 892 SUPERFAMILY Calcium ATPase, transduction domain A 141 197 IPR008250 -
Cca11g02410 892 Gene3D - 841 892 - -
Cca11g02410 892 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Cca11g02410 892 Gene3D - 284 431 IPR023299 GO:0000166
Cca11g02410 892 PANTHER PLASMA MEMBRANE ATPASE 197 872 - -
Cca11g02410 892 ProSitePatterns E1-E2 ATPases phosphorylation site. 274 280 IPR018303 -
Cca11g02410 892 Coils Coil 843 863 - -
Cca11g02410 892 SFLD p-type atpase 254 582 IPR044492 -
Cca11g02410 892 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 788 IPR023298 -
Cca11g02410 892 Pfam E1-E2 ATPase 139 198 - -
Cca11g02410 892 Gene3D - 156 197 - -
Cca11g02410 892 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 197 747 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca11g02410 892 Gene3D - 70 153 - -
Cca11g02410 892 PRINTS H+-transporting ATPase (proton pump) signature 701 722 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PRINTS H+-transporting ATPase (proton pump) signature 388 406 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PRINTS H+-transporting ATPase (proton pump) signature 562 587 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PRINTS H+-transporting ATPase (proton pump) signature 503 519 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PRINTS H+-transporting ATPase (proton pump) signature 531 547 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PANTHER PLASMA MEMBRANE ATPASE 2 159 - -
Cca11g02410 892 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 506 620 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca11g02410 892 PANTHER PLASMA MEMBRANE ATPASE 157 197 - -
Cca11g02410 892 PANTHER CALCIUM-TRANSPORTING ATPASE 157 197 - -
Cca11g02410 892 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Cca11g02410 892 PRINTS P-type cation-transporting ATPase superfamily signature 160 174 - -
Cca11g02410 892 PRINTS P-type cation-transporting ATPase superfamily signature 426 437 - -
Cca11g02410 892 PRINTS P-type cation-transporting ATPase superfamily signature 448 458 - -
Cca11g02410 892 PRINTS P-type cation-transporting ATPase superfamily signature 554 566 - -
Cca11g02410 892 PRINTS P-type cation-transporting ATPase superfamily signature 531 550 - -
Cca11g02410 892 SUPERFAMILY HAD-like 268 578 IPR036412 -
Cca11g02410 892 PANTHER CALCIUM-TRANSPORTING ATPASE 197 872 - -
Cca11g02410 892 Gene3D - 269 568 IPR023214 -
Cca11g02410 892 Pfam haloacid dehalogenase-like hydrolase 268 545 - -
Cca11g02410 892 CDD P-type_ATPase_H 38 782 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca11g02410 892 Gene3D - 198 756 - -
Cca11g02410 892 PANTHER CALCIUM-TRANSPORTING ATPASE 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02410 Cca-Chr11 50964464 50975003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02410 10 892 Primary Pumps ATPases AT5G57350 79.368 0.0 1474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02410 K01535 - gmx:100816905 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02410 11 50964464 50975003 Cca08g01532 08 45253810 45266587 PCT