Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02408 ATGGAGTGGGACAGCAATTCCGATCTGAGCGGGGACGAAGAGGAAGGGTTCGTCCTCACCGACGACGGCCCTCTCCCCTTCCCTTTCCCCGTCGGAAACCTCCTCCAAACCGCCCCCTGCGGCTTCGTCGTCACCGACGCCCTCGAGCCCGACCACCCTATCATTTACGTCAACACCGTCTTCGAGATCGTCACCGGCTACCGCGCCGAGGACGTCCTCGGCCGCAATTGTCGATTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAGTTTCAGAAATTAGAAGATGCCTTGAAGAGGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTGATGAACAGATTGCGGCTGACTCCCATATATGGAGATGATGAGACTATAACACATGTCATCGGAATACAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGCTCCGGGTTCCACAATTAAGGAACCTGCTAAATCATCGGATCGATTTCATTCTTTGCTTTCCTCATTGCGTACTCTTCCAGTGGGGGACAGGAATGTATCTCGTGGAGTTTGTGGGATTTTGCAACTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGATTAACTCCTAGAGACATTGCATCGGTTAGCTCTGTCTGTAGAAGATTATATGAGATGACAAAAAATGAAGATCTTTGGAGAATGGTGTGCCAAAATGCATGGGGTAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCGAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAATTGACCACTCTTGAAGCAGCAGCATGGAGTAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTGCTTTTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTAAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACGCTTTCTTGTGTTAACGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCTAAGCCTCCAACTTGGCGAGAAATTTCTGGATTGGCACCTCCACTTCCCAGATCATGGCACAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGGGGTTGTGCAGATTCTGGAGTACTCTTGAGTGACACTTTCCTCCTTGATTTGTCAATGGAGAAGCCTATCTGGAGAGAGATACCAGTGGCATGGACCCCGCCATCTCGTCTGGGCCACACATTATCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGTTCGAGTGATGTATTCACGATGGATTTAAGTGAGGAAGAACCTTGTTGGAGATGTGTAACGGGGAGTGGCATGCCTGGTGCTGGAAATCCTGGGGGCATAGCACCTCCTCCTAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATTCTAATATTCGGTGGGTCTGTTGCTGGGCTTCACTCTGCCTCTCAGCTTTACATTCTTGATCCAACCGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCCAGATTTGCCTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATCGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGCGAACTCCATGAACTTTCTCTTGCGAGTTCTCTTGTCTAA 1839 0.4899 MEWDSNSDLSGDEEEGFVLTDDGPLPFPFPVGNLLQTAPCGFVVTDALEPDHPIIYVNTVFEIVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPAPGSTIKEPAKSSDRFHSLLSSLRTLPVGDRNVSRGVCGILQLSDEVLSLKILARLTPRDIASVSSVCRRLYEMTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWSKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSLV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02408 612 Pfam PAS domain 39 149 IPR000014 -
Cca11g02408 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Cca11g02408 612 Gene3D - 273 499 IPR015915 GO:0005515
Cca11g02408 612 Gene3D - 500 610 IPR015915 GO:0005515
Cca11g02408 612 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Cca11g02408 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Cca11g02408 612 Gene3D PAS domain 24 160 - -
Cca11g02408 612 CDD PAS 38 148 IPR000014 -
Cca11g02408 612 Pfam Galactose oxidase, central domain 296 346 - -
Cca11g02408 612 Gene3D - 196 244 - -
Cca11g02408 612 Pfam Galactose oxidase, central domain 360 407 - -
Cca11g02408 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Cca11g02408 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Cca11g02408 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Cca11g02408 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Cca11g02408 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
Cca11g02408 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Cca11g02408 612 TIGRFAM sensory_box: PAS domain S-box protein 36 148 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02408 Cca-Chr11 50897173 50904375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02408 31 150 AGC Kinase Gene Family AT5G58140 31.667 5.00e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02408 K12115 - gmx:100301887 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02408 11 50897173 50904375 Cca11g02408 11 50897173 50904375 ECH