Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02404 ATGAGGTATATTCGGAGCAACAGCTTGAAGAGGCTCTTTTCCTTGAGAAGACGCGGTTCAAGGGAACATGTTTTCAGTCCTAACGCCCAAGAAAACTCTCCACGTGAAGAATCTTCTCCAAGACCCTCTTGGAAATGCTTCTCCTATGAAGAGTTGTTTGATGCAACAAGTGGCTTCAGCTCAGAAAATTTGGTGGGAAAAGGAGGGTATGCTGAGGTTTACAAGGGAACAGTGAATGGTGGTGAGGAAATTGCAGTGAAGAGGCTCACAAGAACATCAAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGAACAATTGGTCATGTGAACCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTATCTTGTTTTTGAGCTATCTACAAGAGGTTCTGTTGCATCTCTTCTTCATGATGAAAAGTTACCTCCTTTAGATTGGAAAACAAGGCAAAAGATAGCTATTGGAACTGCACGTGGCCTTCACTACTTGCACAAGGGTTGCAAGAGGAGGATAATCCACCGGGATATTAAGGCTTCAAATATTCTGTTAACAAAAGATTTTGAACCACAGATATCTGACTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTGTTGCTAGAAGTTATCTCTGGGAGAAAACCTGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCGAAGCCAATTTTGAATAAGGGTGAGATACAAGAGTTGGTGGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAGAGAATTGCATTTGCTGCCTCTCTTTGCATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAGGGAGAAACAGATATAGAGAAGTGGAAAATGCCTgaggaagaagaggagcaagaggaggagTTCTGGGGTTTTGAGGATCTAGAATATGAATATGACAGTTCCTTTTCAATGTCTTTACTTGATTCCATTGGAAGCACTTAG 1125 0.4169 MRYIRSNSLKRLFSLRRRGSREHVFSPNAQENSPREESSPRPSWKCFSYEELFDATSGFSSENLVGKGGYAEVYKGTVNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSTRGSVASLLHDEKLPPLDWKTRQKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVLLLEVISGRKPVDGSHQSLHSWAKPILNKGEIQELVDPRLEGAYDVTQLKRIAFAASLCIRASSTWRPTMSEVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02404 374 CDD STKc_IRAK 65 328 - -
Cca11g02404 374 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Cca11g02404 374 PANTHER OS08G0249100 PROTEIN 16 356 - -
Cca11g02404 374 MobiDBLite consensus disorder prediction 23 42 - -
Cca11g02404 374 Gene3D Phosphorylase Kinase; domain 1 29 135 - -
Cca11g02404 374 SUPERFAMILY Protein kinase-like (PK-like) 35 326 IPR011009 -
Cca11g02404 374 SMART serkin_6 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02404 374 PANTHER OS04G0654600 PROTEIN 16 356 - -
Cca11g02404 374 Pfam Protein tyrosine and serine/threonine kinase 62 323 IPR001245 GO:0004672|GO:0006468
Cca11g02404 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Cca11g02404 374 MobiDBLite consensus disorder prediction 25 39 - -
Cca11g02404 374 ProSiteProfiles Protein kinase domain profile. 59 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02404 374 Gene3D Transferase(Phosphotransferase) domain 1 137 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02404 Cca-Chr11 50865411 50870545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02404 45 337 Receptor kinase-like Gene Family AT1G60800 44.850 1.23e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca11g02404 PK_Tyr_Ser-Thr 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02404 - - gmx:100305398 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02404 11 50865411 50870545 Cca11g02404 11 50865411 50870545 ECH
Cca11g02404 11 50865411 50870545 Cca08g01566 08 45991549 45995408 PCT