Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02401 ATGGAGAAAAAAAGAGAACTTGTATATGAAGTATCTAAGTCGCATGGTGCTTCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATACTTTGTGCAGAGATGGGAAAAGAGAGAAAATATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCAACCGACCCTGAACCACATTCTTCTCCTGCACCAGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACATACCTGTTCCTGCGACCAGTGTTCCTGTCAGTAATGGTGGTGATGTTGTTAGTACTACATACTGCAAAAACTCAGCTTGCAAAGCTACCCTAAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAGTATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGTCACCTTGAGTGTGCTTTAAAGCATGATGGTTCTGGAATTGGAAAAGAGGGTGAGCGTCCCAAGCTAGATGGAGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAGCTGATGGTAGCAAAGGATACTAGACGTGTTGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAATGTATGAAGAACTTTATAAAATTGTTGATGAAGCGGTGAAGAAACTTGAACCGGAAGTAGGTCCACTAACTGGCTCACCAGTGAAGATTGGCAGGGGGATTGTGAACAGGCTTTCATCGGGACCTGAGGTTCAGAAACTCTGCGGTTTTGCTATAGAATCACTTGATTCACTGCTTTCGAAAAGGATCTTGCCTTCATCACCCAACCCAACAACTCAAGATGCACACTTGCTGGCTCCAAATATGGTGAGGTTTGAAGATGTCACTGCCACGTCCCTCACTATTATTTTAGGTTCTGATGAACTCACTGATGAAAACACTGCTGCTTACACCTTGTGGCATCGCAAAGCTGATGAAGTGAACTATCCCACAGACCCGACTTGCACCTCGCTCCTACCAAATAGAAGGTTCAGTGTCACGGGTCTAATTCCAGGTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTCAAGGGAGTCAGGTACGTGTGAAGTTCAAATCTCAACAGAGCATGGGGAGGATGAAGTTCCTAATTGCTCGGCAACAGAAAGAAGTCAGAGTCCAGTAACCAACTGTAGCAGCCTTTCAAATCCATCATCAGTGGAAGATGAAACTAATAACTGCAATCCATACAGTGATCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCGACCAGCTTGCTTCTGGAAATTTAGCTAATGATGCTATTAACTGTTCCAATATAGGCGGCATGGTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCCGGAGGAATGCCTGGCTCTGTACCTAGTTCTGAAGTTCTAAAGCTTGAAAACAAGCATTCACCAGAGGAACAAGTCACCGAGGACATGAGCACCGACGATGGGTTGAATTCCCCACCTCTAACGGGGAGGGAATGTGTGCCGTTAGTAGGTAGCTCAGAAGGCGGCTTGCCTAACACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAGGAATGGAAGATCTAAGTCCAGTGGCAAAGATCAAGAAAATGGATCTGGGAAAAGGGATGGCCCCCAAGATGGTAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGATGAGGGCCGTGTCACAAATGGTTTTTCGGACCGGGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCATCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCTGAGCAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2145 0.4387 MEKKRELVYEVSKSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPHSSPAPGQKPAKRQRKSENPSHIPVPATSVPVSNGGDVVSTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKEGERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGFAIESLDSLLSKRILPSSPNPTTQDAHLLAPNMVRFEDVTATSLTIILGSDELTDENTAAYTLWHRKADEVNYPTDPTCTSLLPNRRFSVTGLIPGTEYSFKVVSNDSRESGTCEVQISTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSDQLASGNLANDAINCSNIGGMVPPDADSLSDKQHAGGMPGSVPSSEVLKLENKHSPEEQVTEDMSTDDGLNSPPLTGRECVPLVGSSEGGLPNTPCKLETLKDGPGRNGRSKSSGKDQENGSGKRDGPQDGSTSKKRSGERQDEGRVTNGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATHQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02401 714 MobiDBLite consensus disorder prediction 414 477 - -
Cca11g02401 714 Gene3D Immunoglobulins 324 415 IPR013783 -
Cca11g02401 714 MobiDBLite consensus disorder prediction 64 107 - -
Cca11g02401 714 CDD PHD_VIN3_plant 139 204 - -
Cca11g02401 714 ProSiteProfiles Fibronectin type-III domain profile. 324 419 IPR003961 GO:0005515
Cca11g02401 714 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 714 - -
Cca11g02401 714 SUPERFAMILY Fibronectin type III 323 403 IPR036116 GO:0005515
Cca11g02401 714 CDD FN3 324 405 IPR003961 GO:0005515
Cca11g02401 714 MobiDBLite consensus disorder prediction 497 622 - -
Cca11g02401 714 Pfam PHD - plant homeodomain finger protein 119 238 IPR032881 -
Cca11g02401 714 MobiDBLite consensus disorder prediction 414 459 - -
Cca11g02401 714 MobiDBLite consensus disorder prediction 577 622 - -
Cca11g02401 714 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 714 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02401 Cca-Chr11 50840203 50845088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02401 1 452 PHD Gene Family AT4G30200 54.244 1.08e-156 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02401 - - gmx:100794721 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02401 11 50840203 50845088 Cca11g02401 11 50840203 50845088 ECH