Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02399 ATGTATTCAAACTCAAGCCAGTTCGACGGCAACGCCGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGACTACTCAGAGCGCCGACCCTTCCTTCTTTCCCTCCAAGAATCGCGATGCTCAGGCCTTGCTTCCTCTGACAGTGAAGCAGATCCACGATGCGTTTCAGTCAAGTGACGATAAAACCAATTTGATTGTCGATGGTGTGGACGTTAACAATGTTACTCTTGTAGGAAAAGTGTGCAACAAAGTTGGACGAATTACTGATGTTACTTTTGTGCTTGACGATGGTACTGGGAGGATTGAGTGTAATAAATGGCTTCAGGAAGCTGCTGATACAAATGTTGCAGAGGGTATCTTGGACGGGATGTATGCGAGGCTCCATGGACATTTGAAAGGTTTTCAGGGTAAAAGGACCTTAAATGTTTTCTCTTTTAGGCCAGTGACAGACTTTAATGAGATAGCCAACCATTTCATTGAGTGCATATACGTACATCTCTATAATACCAAGATACGGGTTAGTGTCCCTAATCAGCAAAATGTAATGAATTCCACACCAATCACTCCCACGAAAGGTTATCAAACTCAAGCTGTTCCACCATCAAATCAGTTCTCTGGTCAACAGATCAATGGTCAGAAGAGTGTTGAAGATATGGTCTTAGATGTTCTGCATTTTCCCGCAAACAGGGCAAGAATTGAGGGAGTCCCTCGTGATCTTATAGCACAGAATCTGGGAATTTCTTTGGATAAGCTCATGGTGGCTATTAAAAGTCTTATTGAAGAAGGTGTCATTTATGAAGCTATAGCTGATCATTATAAGTCAACCATCAATGGTTGA 837 0.4313 MYSNSSQFDGNAAFSGGGFMPSQTTQSADPSFFPSKNRDAQALLPLTVKQIHDAFQSSDDKTNLIVDGVDVNNVTLVGKVCNKVGRITDVTFVLDDGTGRIECNKWLQEAADTNVAEGILDGMYARLHGHLKGFQGKRTLNVFSFRPVTDFNEIANHFIECIYVHLYNTKIRVSVPNQQNVMNSTPITPTKGYQTQAVPPSNQFSGQQINGQKSVEDMVLDVLHFPANRARIEGVPRDLIAQNLGISLDKLMVAIKSLIEEGVIYEAIADHYKSTING 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02399 278 CDD RPA2_DBD_D 73 166 - -
Cca11g02399 278 Gene3D - 206 276 IPR036388 -
Cca11g02399 278 PANTHER REPLICATION PROTEIN A-RELATED 4 275 IPR040260 -
Cca11g02399 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca11g02399 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 275 IPR036390 -
Cca11g02399 278 Gene3D - 35 170 IPR012340 -
Cca11g02399 278 SUPERFAMILY Nucleic acid-binding proteins 43 170 IPR012340 -
Cca11g02399 278 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 4 275 - -
Cca11g02399 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02399 1 273 Core DNA Replication Machinery Family AT2G24490 45.290 1.66e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02399 K10739 - gmx:100782819 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02399 11 50778130 50787839 Cca11g02399 11 50778130 50787839 ECH