Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02387 ATGGATTATGATGAGGAGTGTTCAATTGTTCTTGAATTATCTGAAAGGGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAAGAACGGATATACCTCAAGAGCTCTTCAAAACCTGGCTGGATGAATGCTACTGTGGAGGTGTTACTTCATATTGCACGAATCATACAATTAAATGAGTTACGCCAAAAAATTCTGGATTTAATATCAGAATATGGGGACAAGATCAGTGTGAAGGGAATAGTTGAAAAAGAACACAGTTGTGACGAAGAAGAACGGTTGATAGAATGGGGTGAAAACAATGGTGTAACAACACAATTAAAAATAGCTTATATTGAAGGAGCCGGTCGGGGTGCAATAGCCAGGAAAGATCTAAAAGTTGGAGACATTGCTTTGGAAATTCCTGTGTCCACTATCATATCCGAGGAGCATGTGCATGAAACTGATATGTATGGTGTCTTAAAAGAGATTGATGGCATATCATCTGAGACAATTTTGCTATTATGGAGTATGAAAGAAAAGTACAACTGTGATTCAAAATTCAAAATTTACTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAATGTTAGATGGAACCTTGCTATTGGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTCCCTGTTCTGTCCAATAATTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACACTAATAGCATGAAGATAATGTATTCTGACGGAAAGCTAAGAACATGCTTGATCCCTATTGCTGGCTTTCTTAATCATTCATTGTGCCCTCATGTGATGCACTATGGAAAAGTGGATCCTGCAACAAACTCACTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGTTGCTTAAGCTACGGGAGCTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCACAAGGAGACAACCCGTATGATGTTATTCCGTTAGACATTGACGGTTCTGACGTCGATTCTAATGAGGATACACCCATGTCCAACTGGACGACTCACATGGTGCGGGGTACCTGGCTCTCCAAGAATCACAACATATTCTACTATGGCCTTCCCTCTCCATTATTGGACAATCTTCGGAGATCTCGAAGTCCCATGCTGCGAACGAAGACTTTTTTGCAAGGAAGCTTGGAAAATGAGCTGGAAGTTCTTGATAATCTCAAAGATATCTTTGATGACATGATGGATTCTATGGACGAGATCGATCTGGATGACAGAGAAAACTGCAGTTGGGATGAAAATTTGGCTATGGATTTTAAAATTCTACAAAGACGAATTGCCCATTCTGTTTCAACTTCGTGTCACACTGGTATGGAGATGTTAAAGAACGAACTGTACAAGTGCATGGATGAGGACATCCTAGGCTAA 1500 0.3927 MDYDEECSIVLELSERDPFFDKKKKLLQSKGFSPKERIYLKSSSKPGWMNATVEVLLHIARIIQLNELRQKILDLISEYGDKISVKGIVEKEHSCDEEERLIEWGENNGVTTQLKIAYIEGAGRGAIARKDLKVGDIALEIPVSTIISEEHVHETDMYGVLKEIDGISSETILLLWSMKEKYNCDSKFKIYFDTLPEKFNTGLSFSIEAITMLDGTLLLEEIMQARQHLHAQYDELFPVLSNNFPDIFPPELYTWEKFLWACELWYTNSMKIMYSDGKLRTCLIPIAGFLNHSLCPHVMHYGKVDPATNSLKFCLSRPCRSGEECCLSYGSFSSSHLITFYGFLPQGDNPYDVIPLDIDGSDVDSNEDTPMSNWTTHMVRGTWLSKNHNIFYYGLPSPLLDNLRRSRSPMLRTKTFLQGSLENELEVLDNLKDIFDDMMDSMDEIDLDDRENCSWDENLAMDFKILQRRIAHSVSTSCHTGMEMLKNELYKCMDEDILG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02387 499 CDD SET_LSMT 114 344 - -
Cca11g02387 499 Gene3D set domain protein methyltransferase, domain 1 100 344 - -
Cca11g02387 499 Gene3D - 2 99 IPR036464 -
Cca11g02387 499 PANTHER BNAA07G01600D PROTEIN 82 494 - -
Cca11g02387 499 PANTHER BNAA07G01600D PROTEIN 3 76 - -
Cca11g02387 499 ProSiteProfiles SET domain profile. 112 330 IPR001214 GO:0005515
Cca11g02387 499 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 76 - -
Cca11g02387 499 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 82 494 - -
Cca11g02387 499 Pfam SET domain 123 330 IPR001214 GO:0005515
Cca11g02387 499 SUPERFAMILY SET domain 99 351 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca11g02387 SET 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02387 K19199 - gmx:100778605 920.998