Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02381 ATGGCACCAGAAGAATTCATCTTCCGCTCCAAGCTCCCCGACATTCCCATCCCCACACACCTTCCGTTACACTCTTACTGCTTCCAAAACCTCTCCCAATTCCAACACCGTCCCTGCCTCATCGACGGCGACACCGGCCAGACCTTCACCTACGCCGAGGTCGACCTCTCCGCCCGCCGCATCGCCGCCGGCCTCCACCGCCTCGGCATCCGGCAGGGCGACGTGGTCATGCTCCTCCTCCGCAACTGCCCCCAGTTCGCCCTCGCCCTCCTCGGCATCTCCCACCGCGGCGCCGTCGTGACCACCGCCAACCCCTTCTACACGGCGCCGGAGCTGGCGAAGCAAGCCACCGCCACCAAAACGAAACTGATCATAACGCAGGCGGCGTACGTGGAGAAAGTGAAGAGCTTCGCGGATAGCAACGAGGTGATGGTGATGTGCATTGACTCACCCCAACACGACGGCGTTTTGGAATTCTCTAGGCTGACTAACGCCGACGAAAGGGAAGCCCCGGGCGTTAAGATTAACCCGGACGACGTGGTTGCGCTCCCGTTCTCTTCCGGCACGTCGGGGCTGCCAAAGGGGGTTATGATTTCGCATAAAAACTTGGTGACGACTGTGGCGCAGTTAGTTGACGGCGAAAACCCCCATCAATACACTCACAGCGAGGACGTGCTCCTCTGCGTGCTGCCTATGTTTCATATCTATGCGCTGAACTCGATTCTGCTCTGCGGGATTCGCGCGGGTGCGGCCGTGCTCATTCTGCACAAATTTGAGATCACTTGGGTTCTGGAGGTGATTGAGAAGTACAAGGTGACGGTAGCGTCGTTTGTGCCTCCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAAGCGCAACGATACGACTTGTCGTCTATTCGCGCTGTCATCACCGGAGCTGCACCCTTGGGAAGGGACCTCCAAGAAGCCTTGGAGGCTAGGCTACCCCACGCCACCTTTGGACAGGGATATGGGATGACAGAAGCAGGACCACTTACGATCAGCATGGCATTTGCAAAAGAACCCACAAAGGTAAAATCAGGTGCATGCGGAACCGTCGTCAGAAACGCCGAGATGAAAATCGTCGACACCGAAACTGGTGCTTCCCTTCCAAGAAACCAACCCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATTTAAATGACCCAGAGGCTACAGAGAGAACTATAGACAAAGAAGGATGGTTACACACAGGAGATATAGGTTACATGGATGATGATGACGAACTCTTCATTGTGGATCGTTTAAAGGAATTGATCAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGCTCGAATCGTTGTTGATTTCCCACCCAAACATTTCTGATGCCGCCGTTGTAGGGATGAAAGATGAAGCTGCCGGAGAAGTTCCAGTTGCATTTGTTGTAAGATCAAATGGTTCTAAGATCACCGAGGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAAAGAATCAGTAAAGTTTTCTTCACGGAGTCTATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGGAAGGAATTAACAGCAAAACTTAACCAAGGTCTTATGGTGATGGCCAATTAG 1626 0.5246 MAPEEFIFRSKLPDIPIPTHLPLHSYCFQNLSQFQHRPCLIDGDTGQTFTYAEVDLSARRIAAGLHRLGIRQGDVVMLLLRNCPQFALALLGISHRGAVVTTANPFYTAPELAKQATATKTKLIITQAAYVEKVKSFADSNEVMVMCIDSPQHDGVLEFSRLTNADEREAPGVKINPDDVVALPFSSGTSGLPKGVMISHKNLVTTVAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRAGAAVLILHKFEITWVLEVIEKYKVTVASFVPPIVLALVKSGEAQRYDLSSIRAVITGAAPLGRDLQEALEARLPHATFGQGYGMTEAGPLTISMAFAKEPTKVKSGACGTVVRNAEMKIVDTETGASLPRNQPGEICIRGTKVMKGYLNDPEATERTIDKEGWLHTGDIGYMDDDDELFIVDRLKELIKYKGFQVAPAELESLLISHPNISDAAVVGMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISQQVVFYKRISKVFFTESIPKAASGKILRKELTAKLNQGLMVMAN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02381 541 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Cca11g02381 541 Gene3D - 2 432 IPR042099 -
Cca11g02381 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 532 - -
Cca11g02381 541 Gene3D - 433 537 IPR045851 -
Cca11g02381 541 CDD 4CL 17 528 - -
Cca11g02381 541 ProSitePatterns Putative AMP-binding domain signature. 183 194 IPR020845 -
Cca11g02381 541 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 532 - -
Cca11g02381 541 Pfam AMP-binding enzyme 30 438 IPR000873 -
Cca11g02381 541 SUPERFAMILY Acetyl-CoA synthetase-like 13 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02381 Cca-Chr11 50551010 50557889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02381 5 500 Monolignol Biosynthesis Gene Families AT1G51680 65.476 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02381 K01904 - gmx:548034 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02381 11 50551010 50557889 Cca11g02381 11 50551010 50557889 ECH