Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02380 ATGAGTTTCCATCCCAATACTTCTCTTCACCTAAGCCAACCAGATAATGAGAATCATCTGAGTCTAGAtctttttcttgagccttcttcttcttcatcatcttctccttcatctcttAGTCCCATTGAGCCAAGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCTTTAGGAGGCCACCAAAATGCTCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTCATCATCCATGCAATCTTATGGAGCACAAGAGCAGCGATCAAACTTCAGTGCTTCACATTCACACCATCTTGGTCGTGCTCTTGGGGTTGTGGATAACCAATTGCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGAAAAGAGTTTAGTTATGGTCCCAAGGAAGGGGTGGCTTCCTGGTCAAGGGGTTATACTACTTCTGAACATGTTCAGGAGGATATTGGCCAACTTGACTTGTCATTAAGGCTTTGA 501 0.4012 MSFHPNTSLHLSQPDNENHLSLDLFLEPSSSSSSSPSSLSPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSSSMQSYGAQEQRSNFSASHSHHLGRALGVVDNQLQGQSYVRLGGRKEFSYGPKEGVASWSRGYTTSEHVQEDIGQLDLSLRL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02380 166 MobiDBLite consensus disorder prediction 80 102 - -
Cca11g02380 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Cca11g02380 166 MobiDBLite consensus disorder prediction 78 102 - -
Cca11g02380 166 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Cca11g02380 166 Gene3D Classic Zinc Finger 32 106 - -
Cca11g02380 166 PANTHER ZINC FINGER PROTEIN JAGGED 1 166 IPR045320 GO:0003700
Cca11g02380 166 PANTHER BNAC02G44440D PROTEIN 1 166 - -
Cca11g02380 166 SUPERFAMILY beta-beta-alpha zinc fingers 44 74 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02380 Cca-Chr11 50535319 50536828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02380 1 86 C2H2 Transcription Factor Family AT5G57520 71.429 2.01e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca11g02380 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02380 - - gmx:100778014 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02380 11 50535319 50536828 Cca11g02380 11 50535319 50536828 ECH