Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02375 ATGTGTAATAAAGGGATTCAATGCTTGAGCGAGTGTGAGAGTGTGATTGATCATAGGCAAGAATTCTTCATGGATAGTCCAATTCGATCGCCGGCCACCGGTTCGGGTTCCGGTGATGAAGGCCGGCGTGTTAAGTTCTTGTGTAGCTTTCTGGGGAGCATAATGCCTCGCCCCCAAGATGGGAAGCTTCGTTATGTTGGTGGTGAGACCCGAATTGTGAGTGTTCAAAGAGATGTTAGCTATGAGGAGTTGATGGGGAAGATGAGAGAGCTCTATGATGCGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCCCTTGTTTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAAGAGTATGATAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATTTTTCTGTTTTCACAATCCGAGCACGATGGTTCCTCTCATTTTATTGATGGGGATGATACTGAGAGGAGGTATGTGGATGCTTTGAATAGTTTAAATGATGCTTCTGAGTTTAGGAGGTTGCAACCAGGGGATTTTCCTGTGATTGGCCCTGTTGAGGACATACATATGGCTGATCAGTTCTTTAATCCAATCAGTGTGGAAACTGGGATTCATAGCCAGAGAAGTGGGGACTTATCTATGTACAATATGCATCATTTAACAGTCCAGCACACGCAAACTATGGGCCAGAGATATAATGAAATGGATGCTCCTTGGAATCCTGCCTATTACTCTCCTAGGCATCATGGTCTCCCTGATTCCAGGTCATTGGTTGAGTATCCATCTTCTCCTTCCGGTACAAGGTACCGTGTGCCATATACTGAATTTTCAGATAAAGGCATTGATAGAGTGCCGGAAGAGTATGCTCGACATCATGTAAATCATCATCCTGTGTATGACAATCAACCACAATATTCTGAAAATGTTATGTGGGTGCAGACTGGAGCAACACATGGTGAAAAATCGGGTTTCGCAGGCAATGTTCTTCACAGTCCCCATGTTCTTGATGGGAACAGTATATGTGACCAGCGTCGCATGGGTTTTCAGAGATGTCAACCACATTTGGAGCATTCTAATCTTACTAATGGACTTGCGCCAGTTGCTAATCCATGTGCAGAATGCCCACCGAATAGGGATACTTACATGGTGAATGCTGATACAAAGTTACATCCTCTAATCTATCCCAATGAACCTAATAATGATCATAGGCCTGTTTATACCGATACTCAGAATCATGAGAGAGGATGGGGTTTGCAGCATCAGCCAACTTCTCGGGTTGAGGAACCAAGAGGACATGTCTCTGGATCTGGAAGAGTGAATGATGTTCCCGTTGTAAATGTCTCTCGTGGGATTGGTAGTGTGGCTGATGGACATACATTGCCTTCCAATTATGTTCATCAGCAGGCTGGACCTGAAGTGGGGACCGAACTGTTCCCTGACCAAACTGTGCCTGCTATACCACCTATACAAATTCCTCCACTGGAAGAATGCAATTTGAGGTATGGAAATTCACCTTCTGCTTATGGAGTAGATAGCAATTACGCTGTGCCCCGTGGACATCCATCTGGTTTCTGGAGAAACGCTCCAATGCCTGTTCATGTTGGACCAACTTATGAGGCAGCTACTGCACCTCAGCAAGTGAACGGTATGATAAATGCAGGATTAATAAGGGGAGAGGGCAGTCCAGGATTTTTCATGGGGCCAGATGGTCAACCTAATTGGGTTGATTCCTCACAGAAATTGGCAGGACATGATGCTGCAGCCATCCCAGAATATCCATATGCACATGCTCTGAAGTTGAATCCAACCCCCCTTGGTCAAGAAAATCAACTCCCGGTTGTTGGAGAAACCATTCATCCCCCACAGGACAAGAATGCTGGTACCTACTTGGAACCTGTGCAGCTGCCAAAATCATCTAATATGGTTCACAATCAGGATGTTTTAAGAAATGATACTCATGTGGCTGAATCAAAGAGTTCTGAACCTAATAGTTTGCTTAGAGAAGGATTAGAGATAAAAATTGAGCAGAAGGTTGAAAAGTCTGATATCGAGACTGTATCTTCAGAGCAAAATAAAATTGTTGAGAATGCATGTGAAGATGCTGCTTTTGTTGAGTCTAATAATTCAAAGTCAAAACCTGAAGCAGACTGTGGGCATGTTGAGAAACTGGCTGATAAGGACCATTCTGTTCCAGAAGATTCTAAGCATTCAGTTAATCAGTTCAGCTTCTTGCCTGATTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATGCCGATGAGGCAAAAGCGACAGCTGGTAAACTTGCCAATTCTCAAAATCGCCATTCAGATGCCAAAGCTGAAACAGCAAATGAAGTGGAAGCAGCAAATGCTCAGGGTGATTTAGAATTGGAACCTGAAAATGACCAAGTAGATACCTCTAAAATTGAGCCTACAAGGGCTGAGGAAGAAGCAATTGCTAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAAATCCGTGAACTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGATCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATAGCAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCTTTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGTCCCGATGGTTCTTTAGCAACGGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATCGATCGTCGTAAGAGGCTTATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCACGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATTTATTGGTCAATATGAGAGATCCTCAACGGCCTGTCTGTAAGATTGGAGACTTAGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCACCTGAACTTCTTAGTGGGAAAAGCAATATGGTGTCAGATAAGATTGATGTCTACTCATTTGGAATAGTCATGTGGGAATTACTCACAGGAGATGAACCCTATACTGATATGCACTGTGCTTCAATAATAGGAGGAATAGTAAACAACACTTTACGTCCTCAAATCCCAACATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGTAGAAAGGCCATCTTTTTCAGAAATTTCAAAGAAGCTGAGGAGTATGGCCGCTTCAATGAATGTGAAGTAG 3336 0.4326 MCNKGIQCLSECESVIDHRQEFFMDSPIRSPATGSGSGDEGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDVSYEELMGKMRELYDAAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEHDGSSHFIDGDDTERRYVDALNSLNDASEFRRLQPGDFPVIGPVEDIHMADQFFNPISVETGIHSQRSGDLSMYNMHHLTVQHTQTMGQRYNEMDAPWNPAYYSPRHHGLPDSRSLVEYPSSPSGTRYRVPYTEFSDKGIDRVPEEYARHHVNHHPVYDNQPQYSENVMWVQTGATHGEKSGFAGNVLHSPHVLDGNSICDQRRMGFQRCQPHLEHSNLTNGLAPVANPCAECPPNRDTYMVNADTKLHPLIYPNEPNNDHRPVYTDTQNHERGWGLQHQPTSRVEEPRGHVSGSGRVNDVPVVNVSRGIGSVADGHTLPSNYVHQQAGPEVGTELFPDQTVPAIPPIQIPPLEECNLRYGNSPSAYGVDSNYAVPRGHPSGFWRNAPMPVHVGPTYEAATAPQQVNGMINAGLIRGEGSPGFFMGPDGQPNWVDSSQKLAGHDAAAIPEYPYAHALKLNPTPLGQENQLPVVGETIHPPQDKNAGTYLEPVQLPKSSNMVHNQDVLRNDTHVAESKSSEPNSLLREGLEIKIEQKVEKSDIETVSSEQNKIVENACEDAAFVESNNSKSKPEADCGHVEKLADKDHSVPEDSKHSVNQFSFLPDLIASVKKAALEDADEAKATAGKLANSQNRHSDAKAETANEVEAANAQGDLELEPENDQVDTSKIEPTRAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSDKIDVYSFGIVMWELLTGDEPYTDMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAASMNVK 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02375 1111 SMART PB1_new 58 143 IPR000270 GO:0005515
Cca11g02375 1111 PRINTS Tyrosine kinase catalytic domain signature 920 933 IPR001245 GO:0004672|GO:0006468
Cca11g02375 1111 PRINTS Tyrosine kinase catalytic domain signature 957 975 IPR001245 GO:0004672|GO:0006468
Cca11g02375 1111 PRINTS Tyrosine kinase catalytic domain signature 1028 1050 IPR001245 GO:0004672|GO:0006468
Cca11g02375 1111 PRINTS Tyrosine kinase catalytic domain signature 1072 1094 IPR001245 GO:0004672|GO:0006468
Cca11g02375 1111 ProSiteProfiles Protein kinase domain profile. 838 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02375 1111 SMART serkin_6 838 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02375 1111 ProSitePatterns Protein kinases ATP-binding region signature. 844 865 IPR017441 GO:0005524
Cca11g02375 1111 Pfam Protein tyrosine and serine/threonine kinase 839 1101 IPR001245 GO:0004672|GO:0006468
Cca11g02375 1111 MobiDBLite consensus disorder prediction 420 447 - -
Cca11g02375 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 963 975 IPR008271 GO:0004672|GO:0006468
Cca11g02375 1111 Gene3D - 62 146 - -
Cca11g02375 1111 Gene3D Transferase(Phosphotransferase) domain 1 924 1111 - -
Cca11g02375 1111 MobiDBLite consensus disorder prediction 772 815 - -
Cca11g02375 1111 CDD STKc_MAP3K-like 844 1101 - -
Cca11g02375 1111 SUPERFAMILY Protein kinase-like (PK-like) 830 1099 IPR011009 -
Cca11g02375 1111 SUPERFAMILY CAD & PB1 domains 60 150 - -
Cca11g02375 1111 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 23 1111 - -
Cca11g02375 1111 CDD PB1_UP2 47 143 - -
Cca11g02375 1111 Pfam PB1 domain 59 144 IPR000270 GO:0005515
Cca11g02375 1111 Gene3D Phosphorylase Kinase; domain 1 824 923 - -
Cca11g02375 1111 PANTHER - 23 1111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02375 Cca-Chr11 50451708 50458300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02375 39 1111 MAP Kinase Kinase Kinase AT5G57610 53.195 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Cca11g02375 PK_Tyr_Ser-Thr 3.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02375 - - gmx:100779077 1871.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02375 11 50451708 50458300 Cca11g02375 11 50451708 50458300 ECH