Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02374 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAATGTGAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTACACTTAAAGCCTACATTGAAAATAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGATGTGGAAAAAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGTAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGACTGAAGAAGAAATTGCTTGGGAGGCGCAAACAATCTAACTTCAACGCAAAAGACACAAATGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGCTCAGCTCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCACTTTCTACAACAACCCTGCGCTGTGGCCCAAGTTGCATCCCTTCCAAGAAAAGATGATCCAGGGCCTTCAATCTTTGAATGATGGATCTAACCCTGTGATGCAAAATGCCTTGCCTTCCCCACATGATGAACAAGGACAAAAAGATGAGTTCTACAAGCCACAACAAGATGGTGCAAAGATCAATAACCCACAGGTTCATCTTTTGGAGAATATTCCTTTGAGTAACAGTGGAGTTCCCTTTGCTGCTTCTGGGAGTAATAATACAATGAACTCAAGCCTTGCACCAAGAGCTGAGGCTGTTGAGCAGACTAATAATGTGGGACTTCAGCAACTTGGTGCACTGCAAACTGAACTTGATGACATTCTCAACAACAGAACAATGAGTTATGGTGTGCCACAGGAAGATCATGACATGGCTGGATTTGATTGTTTCAAAGAGATGAATAGCTCAAAGGACAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAGTCAGCATCCTCAAATTCCTGGGACTCATCTACTACTCCAGGTCTTCTAACACAAGGGATGTTTCAAGATTATGAACTGGGTTACAGTCTCTAG 1080 0.4269 MGRAPCCDKANVKKGPWSPEEDATLKAYIENNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNAKDTNGIEENSYSNALSSSALERLQLHMQLQSLQNPFTFYNNPALWPKLHPFQEKMIQGLQSLNDGSNPVMQNALPSPHDEQGQKDEFYKPQQDGAKINNPQVHLLENIPLSNSGVPFAASGSNNTMNSSLAPRAEAVEQTNNVGLQQLGALQTELDDILNNRTMSYGVPQEDHDMAGFDCFKEMNSSKDSLIWWSNDSDTKSASSNSWDSSTTPGLLTQGMFQDYELGYSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02374 359 Gene3D - 7 68 - -
Cca11g02374 359 CDD SANT 71 113 IPR001005 -
Cca11g02374 359 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca11g02374 359 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca11g02374 359 SMART sant 13 64 IPR001005 -
Cca11g02374 359 SMART sant 67 115 IPR001005 -
Cca11g02374 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Cca11g02374 359 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca11g02374 359 PANTHER OS09G0431300 PROTEIN 1 323 - -
Cca11g02374 359 CDD SANT 16 62 IPR001005 -
Cca11g02374 359 PANTHER OS09G0431300 PROTEIN 1 323 - -
Cca11g02374 359 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca11g02374 359 Gene3D - 70 141 - -
Cca11g02374 359 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca11g02374 359 MobiDBLite consensus disorder prediction 192 206 - -
Cca11g02374 359 MobiDBLite consensus disorder prediction 192 213 - -
Cca11g02374 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02374 Cca-Chr11 50442003 50443745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02374 1 198 MYB Transcription Factor Family AT5G57620 74.272 2.30e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca11g02374 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02374 K09422 - gmx:778083 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02374 11 50442003 50443745 Cca11g02374 11 50442003 50443745 ECH