Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02370 ATGGGGTTTGCCAAAAAAATTGGTGAGTATCAGCTTGGTAGGACAATAGGAGAAGGTACATTCTCTAAGGTTAAGCTGGGTGTCAATGGCAACAATGGTCAGAAGGTTGCGATCAAGGTCATTGATAAGCATATGATCCTGGAAAACAATCTTAAGAATCAGGTTAAAAGAGAAATCAGAACAATGAAACTTCTGCACCATCCAAATATAGTTAGAATTCACGAGGTTATTGGCACAAAGACGAAGATATACATTGTAATGGAATATGTATCAGGAGGACAACTACTAGACAAGATGTCCTATGGCGAGAAGTTGAATGAATGTGAGGCAAGAAAACTATTCCAGCAACTTATTGATGCCTTGGATTACTGCCATAACAAAGGGGTTTATCATCGAGATCTCAAGCCAGAAAACTTGCTTCTTGACAACAGGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGCGCGTTGCAAAAGCGTAATGAAGTCTTAACCACAAGGTGTGGATCCCCATGCTATGTGGCACCTGAGCTGCTATTGAGCAAGGCGTATGATGGAGCATCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTTGAATTACTTGCAGGTTATTTGCCATTTAATGACCAGAACTTGATGAGCTTATATGCAAAGATATGGAAGGCAGAATATAAATGTCCCCCTTGGTTTACTCACAATCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGTAAAGAGGATAACTGTACCAGATATTATTGAAGATGAGTGGTTTCAAACAGATTACAAGCCTGCTTTTGCATCTGACTTTGATCATAACATTAACTTGGATGATGTTGATGTTGCTTTCAATTCAATTGAGGAGAATATCACAGAGCCAACTATATCCAAGTCCTCAAGTTTCATCAATGCGTTTCAACTAATAGCTATGTCTGAGGACCTTGATCTATCTGGCCTTTTTGAAGAACAGGATGAAAAAAAGCAGAGAACAAGGCTGGGATCCAAACACACTATCAATGAAACAATAGAAAAAATAGAGGCCGCTGCAACAGATGTAAGAATGTCGGTAGAGAAAATGAACAACTTTAAGATGAAAATGCAACCAAAACAGATGATGACCAGGTGTTCTAGATCATATTCATACCTATCAGCCCAGGTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCCGCAGGAGATCTAAGAATGTACAACAAATTTTGTGAAAGTCTATCAAATTTGTTGAAAAAAAAACCTGGTGTGCCATCACAAAGCCAAGACTCTGTAGTTCCATTCGCCAGAAAAAAGCAAGATGCTCAATGTTATGAAGATCTAAAAAGTGAAGATAGCAAACTTCTTCGTGGCTATAAATCTGCTTGA 1404 0.3853 MGFAKKIGEYQLGRTIGEGTFSKVKLGVNGNNGQKVAIKVIDKHMILENNLKNQVKREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYGEKLNECEARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDNRGNLKVSDFGLSALQKRNEVLTTRCGSPCYVAPELLLSKAYDGASADVWSCGVILFELLAGYLPFNDQNLMSLYAKIWKAEYKCPPWFTHNQKKLIAKILEPRPVKRITVPDIIEDEWFQTDYKPAFASDFDHNINLDDVDVAFNSIEENITEPTISKSSSFINAFQLIAMSEDLDLSGLFEEQDEKKQRTRLGSKHTINETIEKIEAAATDVRMSVEKMNNFKMKMQPKQMMTRCSRSYSYLSAQVIEVAPTHCVVEISKSAGDLRMYNKFCESLSNLLKKKPGVPSQSQDSVVPFARKKQDAQCYEDLKSEDSKLLRGYKSA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02370 467 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02370 467 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Cca11g02370 467 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02370 467 Pfam NAF domain 304 362 IPR004041 GO:0007165
Cca11g02370 467 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Cca11g02370 467 Gene3D Transferase(Phosphotransferase) domain 1 90 285 - -
Cca11g02370 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cca11g02370 467 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 428 - -
Cca11g02370 467 Gene3D Kinase associated domain 1, KA1 301 425 - -
Cca11g02370 467 PANTHER SERINE/THREONINE KINASE 6 428 - -
Cca11g02370 467 Gene3D Phosphorylase Kinase; domain 1 3 89 - -
Cca11g02370 467 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02370 467 CDD CIPK_C 307 425 - -
Cca11g02370 467 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02370 Cca-Chr11 50412770 50416019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02370 87 423 CBL-interacting serine-threonine protein kinases AT5G57630 60.472 1.19e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca11g02370 Pkinase 9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02370 - - gmx:100786097 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02370 11 50412770 50416019 Cca11g02370 11 50412770 50416019 ECH