Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02365 ATGGTACTTCCCTCCCCTGCCAAAATACTAGTTGGCCTCTCCTTAGATCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACTCCATCGTGGCCGTGCATGTTCTTGTTGCTGAGAGTAAGAAGAAGCGTGTCTCAGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCCAGGGTGGCACTCAATTCGACAGTTGGTGAAGGTTTAGTGGAGGAAGCCAAGTCCATCAATGCTGACTTTCTTCTTATTCGTGGTTCAAGGAACCGAACAAATAAGATTGGAACTTCTAAAGGGATTACCAAGCATTGTTTTGAGCATGCACATGAAGGTTGTACGATGGTCTCAGTTGGGAGACGTACAAAGGCAGATCAAAGTGCCAACTCAAACTCAACACGTTTTCAAGATAATAAACGACCAAGTTCAAGATGGTTTAAGAAGGATAAGCATTGTGACAAGGGTACCTCCCCTGTTCTGGAGGATTATATCTCAGGAACCAAGGCACTGAACCGTTCACCAAGAACGGTACTAGATTCTCTAGAGGGACAATCGAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCCAGCACCACGTATACCCCATCATCAGATTCTAAGATTAAGAGCGGATCCAAGATAAGAAAACACCAGTTCCCATTCAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAGGTTTTAATATATCCAAAAATGAAAAGCGACAGCCTTTATTGAAGTGCTTCAGCTATGAACAGATAACCAATGCTACCAACGACTTCCACCAAGATAATTTGGTAGGACGAGGAGGGTACTCAGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCAGTGAAGAGGTTGACCAAGGACAACAAGGATCCTAACAAAGAAAAGGAGTTCCTTATGGAGTTGGGTGTTATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTGGGATGCTGCATTGAAAATGGGCTATATCTGGTTTTCAATTACTCTCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACTTGACTGGCCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGAATAATTCATCGTGACATCAAAGCCTCTAATGTGCTTCTGGGTCCTGATTATGAACCACAGATTACCGATTTCGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCACCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATATTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCCTCAAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGTGAGCTAGCTGATCCAAGAATGGAAGGTAAATATGATGAAGAGCAACTGTATAGGGTAGTGCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTTTTAGAGCTGCTAGCCAGTGGGCAAGAGAGTGAAGCTGGAAAGAGCTGGAGGATCCCAAAGTTCACTTCAGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACATATCTTTGGAGGATTATTTGTGA 1821 0.4338 MVLPSPAKILVGLSLDPDDSKELLSWAIRVLANPNDSIVAVHVLVAESKKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEEAKSINADFLLIRGSRNRTNKIGTSKGITKHCFEHAHEGCTMVSVGRRTKADQSANSNSTRFQDNKRPSSRWFKKDKHCDKGTSPVLEDYISGTKALNRSPRTVLDSLEGQSNSTEDDTFSTRVSSTTYTPSSDSKIKSGSKIRKHQFPFRFIVSFLASPFRRKGFNISKNEKRQPLLKCFSYEQITNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLTKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLVFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDIFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIGELADPRMEGKYDEEQLYRVVLTASYCVRQTATWRPPMSEVLELLASGQESEAGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02365 606 Pfam Universal stress protein family 8 139 IPR006016 -
Cca11g02365 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Cca11g02365 606 SMART serkin_6 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02365 606 SUPERFAMILY Protein kinase-like (PK-like) 273 563 IPR011009 -
Cca11g02365 606 Gene3D HUPs 4 148 IPR014729 -
Cca11g02365 606 MobiDBLite consensus disorder prediction 151 181 - -
Cca11g02365 606 ProSiteProfiles Protein kinase domain profile. 296 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02365 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Cca11g02365 606 CDD USP_Like 8 140 - -
Cca11g02365 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 122 - -
Cca11g02365 606 Gene3D Phosphorylase Kinase; domain 1 262 372 - -
Cca11g02365 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Cca11g02365 606 MobiDBLite consensus disorder prediction 204 240 - -
Cca11g02365 606 Pfam Protein kinase domain 296 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02365 606 Gene3D Transferase(Phosphotransferase) domain 1 374 580 - -
Cca11g02365 606 MobiDBLite consensus disorder prediction 151 169 - -
Cca11g02365 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Cca11g02365 606 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02365 Cca-Chr11 50294278 50297829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02365 284 602 Trihelix Transcription Factor Family AT1G70460 39.763 3.46e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca11g02365 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02365 - - ccaj:109809416 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02365 11 50294278 50297829 Cca11g02365 11 50294278 50297829 ECH