Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02364 ATGGGAACCTCCATCAGTTGCTGTGGCTCAGATAGGGTCGAAGAACTGCCAACATCATTTGGCGTAATTAACAATTCATGGAGAATATTTACATACAAGGAGTTGCATGCGGCTACCAACGGATTCAGTGATGATAACAAGCTTGGTGAAGGTGGTTTTGGAAGTGTCTATTGGGGAAGAACCAATGATGGTCTTCAGATAGCAGTGAAGAAACTGAAGGCAATGAACTCTAAGGCAGAGATGGAATTTGCAGTAGAAGTTGAGGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTAGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTCATAGTGTATGATTACATGCCAAATCTCAGCCTGCTTTCTCATCTCCATGGCCAGTTTGCTGTTGATGTGCAACTAAATTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCAGAGGGCCTTCTGTACTTGCACCGTGAGGTGACACCCCACATCATCCATAGGGACATAAAAGCAAGTAATGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGTTTTGCAAAGCTAATCCCAGAAGGAGTTAGCCACATGACTACTCGTGTGAAGGGTACATTGGGATACTTGGCCCCTGAATATGCCATGTGGGGAAAGGTCTCCGAAAGTTGTGATGTGTATAGCTTTGGAATTCTTCTGTTGGAGCTGGTAACCGGTAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCCTTAATAAGCATAGGAAAGTTCAGGGATCTTGTTGATCCAAAACTCAGAGGGAACTTTGATGAAAATCAAGTGAAACAAGCAATCAATGTGGCTGCTCTTTGTGTGCAAAGTGAGCCTGAGAAGCGACCAAATATGAAGCAAGTGGTTAACCTTCTCAAAGGGTATGAATCTGATGAGAAAGTCACGACCATGAGGATAGATAGTATCAAATATAATGAAGAACTATTGGCACTTGATCAACCTAGtgatgatgatgatgatgatgCAAGTGCTAGCTATGGTGTCTTTAGTGCCATTGAAGTCCAGAAGATGAAGGATCCATACAAGCGCAGTGATAACAAGAAAATAGGCTAA 1137 0.431 MGTSISCCGSDRVEELPTSFGVINNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVDVQLNWQRRMKIAIGSAEGLLYLHREVTPHIIHRDIKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLISIGKFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESDEKVTTMRIDSIKYNEELLALDQPSDDDDDDASASYGVFSAIEVQKMKDPYKRSDNKKIG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02364 378 Coils Coil 62 82 - -
Cca11g02364 378 Pfam Protein kinase domain 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02364 378 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 377 - -
Cca11g02364 378 SUPERFAMILY Protein kinase-like (PK-like) 26 321 IPR011009 -
Cca11g02364 378 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Cca11g02364 378 CDD STKc_IRAK 48 315 - -
Cca11g02364 378 ProSiteProfiles Protein kinase domain profile. 42 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02364 378 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02364 378 PANTHER OS01G0750732 PROTEIN 1 377 - -
Cca11g02364 378 Gene3D Transferase(Phosphotransferase) domain 1 118 336 - -
Cca11g02364 378 Gene3D Phosphorylase Kinase; domain 1 17 117 - -
Cca11g02364 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02364 Cca-Chr11 50288775 50290688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02364 1 313 Trihelix Transcription Factor Family AT1G70460 48.580 5.03e-97 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Cca11g02364 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02364 - - gsj:114393039 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02364 11 50288775 50290688 Cca11g02364 11 50288775 50290688 ECH