Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02360 ATGGCTAGGTGTTTCTCATCCCTTCTCCCTTGGTTCCTTATCTCTTTGCTTGTGCTGCTACAGACACAAACGGGGATTGGGTCAAGTGCGGAAGTGACCAAGTTGAGAGTAGGGGTACCCCAGAAACATGGTTTCCGCCAATTTGTGAATGTAGTTTTGGACGACTCTCGTCCACAAAAATACAACATATCTGGATACTGCATGGATGTGTTCAATGCCGTCGTAACCCGCTTACCTTTCAATGTTTCTCTAGATGTTGAACCTTATCCAATTTTTTCTAATGCCTCGAGGAAGAGTTATGGAACATACGAAGCACTTCTCCATCAGATCCCGTCAAAGTACGATATTGTGGTGGGGGATATAACAATCTTGGCCAACCGTTCGAATTTCGTAGATTTCACACTGCCGTACACAGGATCGGGAGTTAAAATGCTGGTATCAGTTCAACATGGGAGGCACCAAACCATGTGGATTTTCATCAAACCCTTCAGCTGGGATCTTTGGTTGAGCATAATCATCATTTCTACGTCCATAGGGGTTTCCATACTCATCATGGAAAGAAATGTAAACGCGCTTCCTAATCAAGAGGGTTCACCCAATCGATCTAAGCTTAGCGCTGCCACCATCTTATGGTTTCCAATTTCTCAAGCCATTCTTCCCGAAAGACAAGTGGTGGCGAAGAACTGCTCGAGATTTGTGTTGATGATTTGGCTTCTACTGGCGTTCGTCCTAATGCAAAGTTACACCGCAAACTTGACGTCTATATTGACTTTGGATCAGCTGCGACCGAGTTTTCTGAACGTAAATGATCTAAGAAAAGAGGGTTATTATGTAGGGTATCAAACGGGGTCATTCGTTTATGACGTGTTGGTACAGAAGTTCAAGTTTAACCCGTCCAAGTTGAAGCCATATAGCAACATTTCTGAGTATCATCATGCTTTAAAATTAGGAGTCCAACGTGGGGGTGTTGCAGCTATTTTCGACGAAGTGCCTTACCTCAAAGTGTTTCTTCAACAATACGGATCCAATTACATCTTGGCGGGCCCCActtacagaaatgatggtttcggttttGCATTGAGAAAGAACTCAACTCTCACGGCTTCCTTTTCGAGAGCCATCTTGAATGTGACTGAAAGTGACTTAATGAATGAAATTGAGGAAAAGTATTTTGGGAAGAATGAGATTGGAGGAGAAGACTCGTCTACGGAAATTTCTTCGGGTCCTTTGAGTCTCACGTTTCATAGCTTTGCAGGGTTGTTCATGATCACTGGGGTTGCTACGTTATTGGCCCTATTGGTCTCAGAAGCTGTTATATGGCAAAAGCCAATTTTGATGGCTAAAGAATTGAGTATGAGATATTTGTTCCCCACTGCACCTTCCTCACCAACACGTGTTCATCCAACACACGGAACAGAGGAGGCCGTTTAA 1431 0.4298 MARCFSSLLPWFLISLLVLLQTQTGIGSSAEVTKLRVGVPQKHGFRQFVNVVLDDSRPQKYNISGYCMDVFNAVVTRLPFNVSLDVEPYPIFSNASRKSYGTYEALLHQIPSKYDIVVGDITILANRSNFVDFTLPYTGSGVKMLVSVQHGRHQTMWIFIKPFSWDLWLSIIIISTSIGVSILIMERNVNALPNQEGSPNRSKLSAATILWFPISQAILPERQVVAKNCSRFVLMIWLLLAFVLMQSYTANLTSILTLDQLRPSFLNVNDLRKEGYYVGYQTGSFVYDVLVQKFKFNPSKLKPYSNISEYHHALKLGVQRGGVAAIFDEVPYLKVFLQQYGSNYILAGPTYRNDGFGFALRKNSTLTASFSRAILNVTESDLMNEIEEKYFGKNEIGGEDSSTEISSGPLSLTFHSFAGLFMITGVATLLALLVSEAVIWQKPILMAKELSMRYLFPTAPSSPTRVHPTHGTEEAV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02360 476 CDD GluR_Plant 34 391 - -
Cca11g02360 476 Gene3D - 342 398 - -
Cca11g02360 476 Gene3D - 28 155 - -
Cca11g02360 476 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 472 - -
Cca11g02360 476 SMART GluR_14 34 393 IPR001320 GO:0015276|GO:0016020
Cca11g02360 476 Pfam Bacterial extracellular solute-binding proteins, family 3 63 393 IPR001638 -
Cca11g02360 476 Gene3D - 156 299 - -
Cca11g02360 476 SUPERFAMILY Periplasmic binding protein-like II 11 394 - -
Cca11g02360 476 Pfam Ligand-gated ion channel 394 427 IPR001320 GO:0015276|GO:0016020
Cca11g02360 476 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02360 Cca-Chr11 50214311 50217382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02360 34 434 Ion Channels AT5G11210 37.562 3.42e-85 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02360 K05387 - gmx:100807817 689.108