LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02354	ATGCTATCGAGATCTTGCTTGGGGCTATTGAATTTGGTATCAGTGGATGACTACACCGGCCTGGGCCGCGTCCCGCGGGTGGTCACGGGAGACGTGCCGGAGTTGGAGATGAACGCCAGGGAGAAATCGGGATCCGACGACGGCGTTTGGGCGGTGTCGCGCGAGCGTAGGATCGTGGTGGCGAACCAGTTACCGATACGCGCGTTTCGCGAGGGGAAGAAATGGAGGTTCGAGTGGGACAAGGACAGCCTGGTGCTTCAGCTGAAGGACGGGTTTCCGTCGGATGTGGAAGTGGTGTACGTGGGGTCGCTGAAAGCGGAGATCGAAGCGTGCGAACAAGAGGAAGTGGCGCAGTTACTCCTGGAAGGGTTTCGGTGCGTGCCAACTTTCATCCCCGCGGAGGTTCACAACAAATTCTACCACGGTTTCTGCAAGCATTACCTCTGGCCTCTGTTCCACTACATGCTCCCCATGTCGCCTAGCCAGGGCGCGCGCTTCGACCGCGCCCAGTGGCAGGCCTACGTCCTCGCCAACCGCATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCCGACGAGGATTACGTCTGGGTCCACGACTACCACCTCATGATCCTCCCCACGCTCCTCCGGAAGCGCTTCCACCGCGTCAAGCTAGGCTTCTTCTTGCACAACACCTTTCCCTCCTCCGAGATATACCGCACTCTCCCCGTCCGCGAGGAGATTCTCCGCGCCTTTCTCAACTGCGATTTGATCGGCTTCCACACTTTCGACTACGCCCGCCACTTTTTGTCGTGTTGCAGCAGGATGCTCGGGATGGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTATGGACGGAACGTCACCGTTAAGATCCTCCCCGCCGGGATTCACATGGGCCTTCTGGAGACCGTTCTGTCGCTGCCGCAGACGGCGTCGCGTGTTAGGGAGTTGAGGGAGCAGTATGAGGGGCGGGTTCTCATATTGGGGCTCGATGACATGGACTTGTTCAAGGGCATTAGCTTGAAGTTCTTGGCGCTTGGGAAGCTTCTAGAAGTGGACGAGTCTTTGAGGGGTCGTGTGGTTTTGGTTCAGATTCTTAACGCGGCTAGGAGCAGAGGGAAGGACATTCAGGATGTGAAGAGCGAGAGCGAGGCCATTGCGAGGGAAATCAATGAGAAATATGGCCAACCCGGGTACCAGCCTATTGTTTTCGTCAATGGCCCCGTTTCAACCCAGGAGAAAGCTGCGTATTACGCTGTTTCTGATTGTTGTGTTGTGAATGCTGTGAGGGATGGGATGAATTTGGTGCCTTATGAGTACACTGTTTGTAGGCAGGGTACTGTTGCTTTGGACAAGGCCCTTGGTGACCAAGGGGAGGGTGAAAAGCCTAAGCAAAGTGTTATCATTGTGTCTGAGTTCATTGGGTGTTCCCCTTCTCTCAGTGGAGCTATCAGGGTGAATCCTTGGAACATTGACGAGGTCGCTGAGGCTATGAATTCTGCCATCACAATGTCGGAGGCGGAGAAGCATTTACGTCATGAGAAGCATTACAAGTACATAAGCTCTCATGATGTGGCTTACTGGGCTAGGAGTTTTGATCAGGATTTAGATAGAGCTTGTAGAGAGCATTACTCCAAGAGGTACTGGGGTGTTGGCTTGGGCTTGGGGTTTAGGATCGTTGCTTTGGATCCTACCTTAAGGAAGCTTTCCGTGGATCACATTGCCTCTGCCTATAGAGGTTCACACAGTCGGTTGATCCTTTTGGACTACGACGGCACCATGATGCCGCAGGCTTCGATAAACAAGACTCCAAGCAGGGAAGTTATTTCTGTCTTGAATTATTTATGTAGTGATCCTGAGAATATGGTATTCATTGTGAGCGGCAGAGACAAGGATTGCTTGAGCAAGTGGTTTTCTCCCTGTGAGAAATTGGGTCTCTCTGCTGAGCACGGCTACTTCACTAGGTGGAGTAAGGATTCTCCTTGGGAGACTTGCGGATTGACGACGGATTTTGAATGGAAAATGATTGCAGAACCTGTGATGGCGCTTTATACAGAAGCAACTGATGGTTCCTTTATTGAACACAAGGAGAGCGCCATGGTTTGGCACCATCAAGAAGCGGATCCTTATTTCGGATCATGCCAAGCGAAAGAGCTTCTTGATCACCTAGAGAGTGTGCTGGCTAATGAGCCGGTAGTGGTTATAAGGGGACAACATATAGTTGAAGTTAAACCTCAGGGTTTGAGCAAAGGTAAAGTTGTGGAAGACCTTATCTCATCCATGCGAAGCAAGGGAAAGTCGCCAGATTTTCTACTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCGTTCAGTATCTAATCCAGTCCTTCCAACCATATCAAATATGTTTGCATGCACTGTTGGACTGAAACCAAGTATGGCTAAATACTATTTGGAGGATTCTAGCGAAGTCATCAAATTGCTTGAGGGACTTGCAACCGCATCAGCCCCACCTTCGTCCGTAACATCTCAGGAATTGCGAGGAGCACTATAG	2565	0.5135	MLSRSCLGLLNLVSVDDYTGLGRVPRVVTGDVPELEMNAREKSGSDDGVWAVSRERRIVVANQLPIRAFREGKKWRFEWDKDSLVLQLKDGFPSDVEVVYVGSLKAEIEACEQEEVAQLLLEGFRCVPTFIPAEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGARFDRAQWQAYVLANRIFADKVTEVINPDEDYVWVHDYHLMILPTLLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREEILRAFLNCDLIGFHTFDYARHFLSCCSRMLGMDYESKRGYIGLDYYGRNVTVKILPAGIHMGLLETVLSLPQTASRVRELREQYEGRVLILGLDDMDLFKGISLKFLALGKLLEVDESLRGRVVLVQILNAARSRGKDIQDVKSESEAIAREINEKYGQPGYQPIVFVNGPVSTQEKAAYYAVSDCCVVNAVRDGMNLVPYEYTVCRQGTVALDKALGDQGEGEKPKQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAITMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGLGLGFRIVALDPTLRKLSVDHIASAYRGSHSRLILLDYDGTMMPQASINKTPSREVISVLNYLCSDPENMVFIVSGRDKDCLSKWFSPCEKLGLSAEHGYFTRWSKDSPWETCGLTTDFEWKMIAEPVMALYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANEPVVVIRGQHIVEVKPQGLSKGKVVEDLISSMRSKGKSPDFLLCIGDDRSDEDMFESIARSVSNPVLPTISNMFACTVGLKPSMAKYYLEDSSEVIKLLEGLATASAPPSSVTSQELRGAL	854

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02354	854	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	589	793	IPR006379	-
	Cca11g02354	854	Gene3D	Glycogen Phosphorylase B;	50	308	-	-
	Cca11g02354	854	Pfam	Trehalose-phosphatase	591	826	IPR003337	GO:0003824\|GO:0005992
	Cca11g02354	854	SUPERFAMILY	HAD-like	588	836	IPR036412	-
	Cca11g02354	854	Gene3D	Glycogen Phosphorylase B;	309	525	-	-
	Cca11g02354	854	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	842	-	-
	Cca11g02354	854	CDD	GT20_TPS	56	540	IPR001830	GO:0003824\|GO:0005992
	Cca11g02354	854	Gene3D	-	717	847	IPR023214	-
	Cca11g02354	854	Gene3D	-	587	703	IPR023214	-
	Cca11g02354	854	CDD	HAD_TPP	589	830	-	-
	Cca11g02354	854	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	56	545	-	-
	Cca11g02354	854	Pfam	Glycosyltransferase family 20	56	541	IPR001830	GO:0003824\|GO:0005992
	Cca11g02354	854	TIGRFAM	T6PP: trehalose-phosphatase	587	836	IPR003337	GO:0003824\|GO:0005992
	Cca11g02354	854	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	842	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02354	Cca-Chr11	50086997	50091394	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02354	10	839	Trehalose Biosynthesis Gene Families	AT2G18700	67.464	0.0	1182

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02354	K16055		-	gmx:100810498	1575.07