Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02349 ATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCACCTTGCTCCCTGAGTTCTCTGCCAGCAACACATGTTCTCCTATTGTTCTTGTACTGGAATCTGGGAGTGAGAGCTCAAGGGAGATTGTTCCCGAGGCTGCTGTTGGAAGGACCAGTTCGGTTATGACAACAAATTCTCGCATTGGTTGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTGTTGGTAAGTGAGAATCCTGATCCAACAGTGCCAAAAGGTGTGGACAAAGTGGTGACTGTGAAGCTGGGGAAGTTCAGAAGTGTGGATGGTGGAGGTGGAGTTGGAGGTGGAGTAGGGGAAGGGAGTAGTAGCACTAGTACCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGGTCATTTGCTTATGTTATGGATGAGACTTCCTCATTGCAAGTGCCCATACGAACTCCTATGAAGAAGCAATCTAGTAAGAAGAAGTCTGGTTTGCCGTTGACTCCAGGGCACAGACCTGCAATGTCAGAATGCGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGCTTTGATGCAACTATAGTTGAGGATGATGTTACTAGTAGTACTGGGGCTGCAAGTACAGTTTGTAATGGGAATAGTGCTGCTATTGCAAGGAGCAGAAAGGAGAGTTTTTCTATATCCAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCAGTGGCGGATTCTTCTAGAAGGGCTGTTTCATTTCGCTTCCCAGTCAAGTCTAGTGTTGGTGCTGCTTCTGGTAGTGCTGATGATGATTTGAAGGTCAAGAGTTGCAAGTTTGACACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGTGAGTTCGACTATGATGAGGAAAACCAGAGTTGTTATAGCATGGATTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTACTTTGGCTCACAGGAAGACAGAATAAGGTTGTTCACTCTGCCTCCAACCTCTAG 1071 0.4585 MECIDTWLLSHSTCPLCRATLLPEFSASNTCSPIVLVLESGSESSREIVPEAAVGRTSSVMTTNSRIGCRGDSEFGSTRVDLKSGELLVSENPDPTVPKGVDKVVTVKLGKFRSVDGGGGVGGGVGEGSSSTSTNNVDARRCFSMGSFAYVMDETSSLQVPIRTPMKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATIVEDDVTSSTGAASTVCNGNSAAIARSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPVKSSVGAASGSADDDLKVKSCKFDTRSTISEMDIGKWENGGGSEFDYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSASNL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02349 356 MobiDBLite consensus disorder prediction 162 176 - -
Cca11g02349 356 SUPERFAMILY RING/U-box 2 25 - -
Cca11g02349 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 257 - -
Cca11g02349 356 MobiDBLite consensus disorder prediction 162 188 - -
Cca11g02349 356 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02349 Cca-Chr11 50031530 50033558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02349 1 356 C3H Transcription Factor Family AT2G18650 37.330 8.71e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02349 - - gmx:100812651 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02349 11 50031530 50033558 Cca11g02349 11 50031530 50033558 ECH