Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02338 ATGGGTGGTTTAGCGAGGCATCTTCCTCTATTGGTTATGATAGTTTTGCAAATTCATTATGCAGCTCTTGCCATCTTCACAAGAGCCGCTCTGTTAGATGGATTGAGTACAACGGTCTTTGTAGTGTACAGGCATGGCATAGCCACTTTGGCTTTGGCACCTATGTTTCTCTCTTCTACGAGGAGACAATCAATGAAGAATTCATTGGGATTCAGGAGCTTCACTTTGATGTTTGTCACAGCCCTTGTTGGAGTCACAGCAAATCAGAATGCATATTTTAGAGGATTATATTATTCATCTTCAACTGCAGCCACGGCAATGAGTAATCTAATACCCGCGTTAACGTTTGTAATTGCAACAATTGTTGGATTTGAGAAAATAGATGTACGAAGCTTAAGAAGCGTGGCAAAAATATTAGGGACAATTTGTTGCGTCAGTGGAGCCTTAACCATGGCTTTGGTCAAAGGACAGAAGCTGTTACACATGGAGTTTCTTCCTTCTATACACCTCACTGGCACTGGAGGTGACGACTGGCTTCTGGGTTGTCTGTTGCTCTTAGCAAGTAGTATTTTTTGGTCATGTTGGATGATCCTTCAGGTACCAATTGCTTCATCTTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTCTTTTCAACACTCCAATCAGCCATAATTGCACTGCTTTCTGAGCCTAATCTTCAAGCATGGATTTTACCCTCACCCCTACAAATTTCATGTTCTTTATACGCAGGAATCGGAATAGCGGTTAGCTTCCTAATTCAATCCTGGTGCATCTCAGAAAGAGGACCCTTGTACTGTGCCATGTTCAATCCTTTGGCCACAGTCATCACTGCTTTGATAAGTGCAACCTTCCTAAAGGAAGAGATATACGTTGGAAGTTTGATAGGGGCTGTTGGAGTTATTGCTGGTTTATATATTGTTCTTTGGGGTAAAGCCAAGGAGTTTGAGGAGTATAAACAAGAGACACCCCAATCAAACTTGCAAAATGATGAGATAAGTAGTAAGATAGATTTGGAAGAACCTCTTCTGTCAGAGAAGTCTGAAAATGTAGCAGAAGCGGAGAACAAGATTCATAAAGAAGATTACCTAAATGGAGGTACTGCCCTTCACTTGGCTGCTTTGAATGGCCATACCAGGTGCATTCGGCTCCTTCTAGTGGACTACATACCTAGCGTCCCTAACTTTTGGAATGCACTACAGACAAATGATCATAAGTCAATCTTAGAATTTGATCGAAGTGGCCTTTGCGAGGTAATTAACAGAACAGCTGATGGAGGCATCACTGCTTTGCATATGGCAGCACTAAATGGGCATGTTGAAAGTGTACAGTTACTCTTGGATTTGGGGGCTTCTGTGTCTGAGGTTACTGGGGAGGATGGAACTACCACAGACTTAATTGGTTCTGGAAGCACTCCACTCCACTATGCTGCATCTGGTGGAAATGCACAATGCTGTCAACTTTTGATTGCCAAGGGTGCCAATCTAACTGCTGAGAATGCAAATGGATGGACCCCCTTGATGGTTGCTCGTTCGTGGCATAGAAACTGGCTTGAGGACATCTTAAAAGAACCTCCAGCAGACCCCTTACAAGTTCTTCCATCTCCATATATATCTCTTCCACTTATGAGCATTGTGAGAATAGCTAGAGAATGTGGATGGAAGACGAATGACTTAGCACCAACATGCTTAGATCCATGCGCTGTTTGTTTGGAAAGGAAATGCATGGTCGCAGTGGAAGGTATACTCCTCTTAAATTGA 1785 0.4275 MGGLARHLPLLVMIVLQIHYAALAIFTRAALLDGLSTTVFVVYRHGIATLALAPMFLSSTRRQSMKNSLGFRSFTLMFVTALVGVTANQNAYFRGLYYSSSTAATAMSNLIPALTFVIATIVGFEKIDVRSLRSVAKILGTICCVSGALTMALVKGQKLLHMEFLPSIHLTGTGGDDWLLGCLLLLASSIFWSCWMILQVPIASSCPDHLLSTFWMCLFSTLQSAIIALLSEPNLQAWILPSPLQISCSLYAGIGIAVSFLIQSWCISERGPLYCAMFNPLATVITALISATFLKEEIYVGSLIGAVGVIAGLYIVLWGKAKEFEEYKQETPQSNLQNDEISSKIDLEEPLLSEKSENVAEAENKIHKEDYLNGGTALHLAALNGHTRCIRLLLVDYIPSVPNFWNALQTNDHKSILEFDRSGLCEVINRTADGGITALHMAALNGHVESVQLLLDLGASVSEVTGEDGTTTDLIGSGSTPLHYAASGGNAQCCQLLIAKGANLTAENANGWTPLMVARSWHRNWLEDILKEPPADPLQVLPSPYISLPLMSIVRIARECGWKTNDLAPTCLDPCAVCLERKCMVAVEGILLLN 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02338 594 ProSiteProfiles Ankyrin repeat profile. 477 509 IPR002110 GO:0005515
Cca11g02338 594 SMART ANK_2a 477 506 IPR002110 GO:0005515
Cca11g02338 594 SMART ANK_2a 373 403 IPR002110 GO:0005515
Cca11g02338 594 SMART ANK_2a 434 463 IPR002110 GO:0005515
Cca11g02338 594 PANTHER WAT1-RELATED PROTEIN 10 349 IPR030184 GO:0016021|GO:0022857
Cca11g02338 594 ProSiteProfiles Ankyrin repeat profile. 434 466 IPR002110 GO:0005515
Cca11g02338 594 Pfam Ankyrin repeats (3 copies) 477 523 IPR002110 GO:0005515
Cca11g02338 594 Pfam Ankyrin repeats (3 copies) 367 462 IPR002110 GO:0005515
Cca11g02338 594 ProSiteProfiles Ankyrin repeat region circular profile. 434 462 - -
Cca11g02338 594 SUPERFAMILY Ankyrin repeat 367 534 IPR036770 -
Cca11g02338 594 ProSiteProfiles Ankyrin repeat region circular profile. 373 394 - -
Cca11g02338 594 PANTHER WAT1-RELATED PROTEIN 10 349 - -
Cca11g02338 594 Gene3D - 318 397 IPR036770 -
Cca11g02338 594 Gene3D - 405 535 IPR036770 -
Cca11g02338 594 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 322 - -
Cca11g02338 594 ProSiteProfiles Ankyrin repeat region circular profile. 477 508 - -
Cca11g02338 594 Pfam EamA-like transporter family 9 143 IPR000620 GO:0016020|GO:0016021
Cca11g02338 594 Pfam EamA-like transporter family 180 317 IPR000620 GO:0016020|GO:0016021
Cca11g02338 594 PRINTS Ankyrin repeat signature 493 507 IPR002110 GO:0005515
Cca11g02338 594 PRINTS Ankyrin repeat signature 435 450 IPR002110 GO:0005515
Cca11g02338 594 ProSiteProfiles Ankyrin repeat profile. 373 394 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02338 Cca-Chr11 49827842 49843537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02338 4 361 Nodulin-like Gene Family AT4G28040 45.833 8.07e-107 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02338 - - gmx:100817369 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02338 11 49827842 49843537 Cca11g02338 11 49827842 49843537 ECH