Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02337 ATGAATCCTATTATATCGGCTGCTTCCGTTATTGCTGCTGGCTTGGCCGTAGGGCTTGCGTCTATTGGACCTGGGGTTGGTCAAGGCACTGCTGCAGGGCAAGCTGTAGAAGGGATTGCACGACAACCAGAGGCAGAAGGGAAAATACGTGGCGATGGTATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACAATAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCCCTGGCTAAACCCATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGCTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTATATGAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATCCCCATAGGACGTGGCCAGCGAGAATTAATTATTGGAGACAGACAAACGGGTAAAACAGCAGTAGCCACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGCGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTGACTACCTTACAAGAAAGAGGAGCAATGGACTACACTATTGTAGTAGCTGAAACAGCGGATTCTCCAGCTACATTACAATACCTTGCCCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATTATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCTGGTCGCGAAGCTTATCCAGGGGATGTTTTTTATTTGCATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATTGTGGAAACCCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCCGCCGATCTATTCAATGCTGGAATCAGACCCGCTATTAATGTCGGTATTTCCGTTTCCAGAGTAGGATCGGCAGCTCAAATTAAAGCCATGAAACAAGTCGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACTCAAAATCAATTAGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACCGTGGAAGAACAAATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTCGTTGAGTTACGCGCTTACTTAAAGACGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAGAAGACCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTCCAGGAACAAGTAGAAAAAAATTGA 1578 0.4189 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAVGQKASSVAQVVTTLQERGAMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTKTFTGEAEDLLKEAIQEQMELFLLQEQVEKN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02337 525 SUPERFAMILY F1F0 ATP synthase subunit C 4 52 IPR035921 -
Cca11g02337 525 Gene3D - 53 110 IPR023366 -
Cca11g02337 525 ProSitePatterns ATP synthase alpha and beta subunits signature. 371 380 IPR020003 GO:0005524
Cca11g02337 525 Gene3D F1F0 ATP synthase subunit C 1 52 IPR038662 -
Cca11g02337 525 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 388 515 - -
Cca11g02337 525 Pfam ATP synthase subunit C 11 48 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cca11g02337 525 Gene3D - 111 387 IPR027417 -
Cca11g02337 525 PRINTS ATP synthase C subunit signature 12 31 IPR000454 GO:0015078|GO:0015986|GO:0045263
Cca11g02337 525 PRINTS ATP synthase C subunit signature 33 48 IPR000454 GO:0015078|GO:0015986|GO:0045263
Cca11g02337 525 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 50 521 - -
Cca11g02337 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 386 IPR027417 -
Cca11g02337 525 TIGRFAM atpA: ATP synthase F1, alpha subunit 50 513 IPR005294 GO:0015986|GO:0045261|GO:0046933
Cca11g02337 525 CDD F1_ATPase_alpha 110 383 IPR033732 GO:0032559
Cca11g02337 525 Pfam ATP synthase alpha/beta family, beta-barrel domain 51 108 IPR004100 GO:0046034|GO:1902600
Cca11g02337 525 Gene3D - 388 516 IPR038376 -
Cca11g02337 525 Hamap ATP synthase subunit alpha [atpA]. 20 517 IPR005294 GO:0015986|GO:0045261|GO:0046933
Cca11g02337 525 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 50 110 IPR036121 GO:0046034|GO:1902600
Cca11g02337 525 CDD ATP-synt_F1_alpha_C 391 516 IPR000793 GO:0015986
Cca11g02337 525 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 165 380 IPR000194 GO:0005524
Cca11g02337 525 Pfam ATP synthase alpha/beta chain, C terminal domain 387 511 IPR000793 GO:0015986
Cca11g02337 525 CDD ATP-synt_F1_alpha_N 51 109 - -
Cca11g02337 525 PANTHER ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC 50 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02337 Cca-Chr11 49816217 49819774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02337 102 386 Primary Pumps ATPases(2) AT4G38510 29.801 2.51e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02337 K02111 - gmx:121173224 863.988