Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02325 ActctctctctctctccctcccttttcccgcatttccttcctcacttctctctttctttttctctctGCAGGGGTGCGCCTAGTCAGTCTCTTTCCGGAACTTTATCTCCAGCTATCGGAAATCTCACCAATCTTCGACAACTGTTACTGCAGAACAACAATATCTCAGGCAATATACCACCCCAACTCGGAACCCTTCCCAACCTTCAGACTCTAGACCTTTCCAACAACCGATTCTCGGGGGTCATCCCTGCATCTCTTAGTCAATTGAATACTCTTCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGTGTCATTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCTGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGAAGTAGCACTACGGATGGTTGCTCTGGCTCAGCAACCCTCATTCCATTTTCTTTCTCACAAGTGTCATCACAAGGAAACCACAGGTCCAAGAAATTAGCAATAGCACTTGGGGTTAGTCTTAGTTGTGCGTCTCTCATCCTCCTGTCTTTTGGGCTATTTTGGTATAGAAAGAAACGGCAGCATGGAGCCATCCTATATATCAGTGAATTTAAGGAAGAGGGAGTTCTTAGCTTGGGGAATCTTAAACATTTTACTTTCAGAGAGCTCCAACATGCCACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTACAGGGGTAAGCTTGGAGATGGCACAATGGTGGCGGTGAAAAGGCTGAAAGACGTAAATGGTAGTGCCGGCGAATCTCAGTTCCAAACCGAGTTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATCGGATATTGTGCTACTCCCAATGAAAAACTTTTGGTTTATCCTTACATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCGCtagactggaacacaagaaagagaatagcaattggagctgccagaggccttctgtatttgcatgaacaatgtgatccaaagataatacacagagatgtaaaggccgccaatgtgcttctggatgactattgtgaggctgttgttggtgattttggacttgcaaagCTCCTTGATCATGCTGATTCCCATGTTACTACTGCTGTCCGTGGCACTGTTGGCCACATAGCACCAGAGTATCTCTCCACCGGGCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACCGGAATGACAGCACTTGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATTCTACATGAAAAGAAGTTTGCGGTGTTGGTGGACAAAGAACTAGGAAACAATTATGATCGAATAGAAGTGGGGGAGATGCTGCAAGTCGCTTTACTGTGTACTCAATATTTGACAGCCCACCGTCCTAAAATGTCCGAAGTTGTCCGAATGCTTGAAGGGGATGGACTTGCTGAGAAGTGGGCATCATCACATAATTATGGCAATCACGACATGAACCCCAGCCACGGCAACAACAGCAATAGTACATCCCGCCCTAACTCTGCTTCTATACATGATGATGTTCATGATCGTTCCAGTATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1764 0.3951 TLSLSPSLFPHFLPHFSLSFSLCRGAPSQSLSGTLSPAIGNLTNLRQLLLQNNNISGNIPPQLGTLPNLQTLDLSNNRFSGVIPASLSQLNTLQYLRLNNNNLSGSFPVSLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTDGCSGSATLIPFSFSQVSSQGNHRSKKLAIALGVSLSCASLILLSFGLFWYRKKRQHGAILYISEFKEEGVLSLGNLKHFTFRELQHATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKFAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNHDMNPSHGNNSNSTSRPNSASIHDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02325 587 Pfam Protein kinase domain 246 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02325 587 ProSiteProfiles Protein kinase domain profile. 245 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02325 587 MobiDBLite consensus disorder prediction 527 587 - -
Cca11g02325 587 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 587 - -
Cca11g02325 587 Gene3D Transferase(Phosphotransferase) domain 1 322 532 - -
Cca11g02325 587 SUPERFAMILY L domain-like 28 143 - -
Cca11g02325 587 Gene3D Phosphorylase Kinase; domain 1 215 321 - -
Cca11g02325 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Cca11g02325 587 Gene3D Ribonuclease Inhibitor 15 158 IPR032675 -
Cca11g02325 587 ProSitePatterns Protein kinases ATP-binding region signature. 251 273 IPR017441 GO:0005524
Cca11g02325 587 MobiDBLite consensus disorder prediction 528 551 - -
Cca11g02325 587 Pfam Leucine rich repeat 67 127 IPR001611 GO:0005515
Cca11g02325 587 MobiDBLite consensus disorder prediction 552 567 - -
Cca11g02325 587 SUPERFAMILY Protein kinase-like (PK-like) 227 515 IPR011009 -
Cca11g02325 587 SMART serkin_6 245 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02325 587 ProSiteProfiles Leucine-rich repeat profile. 68 89 IPR001611 GO:0005515
Cca11g02325 587 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02325 Cca-Chr11 49712589 49717107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02325 17 587 Receptor kinase-like Gene Family AT5G16000 64.421 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca11g02325 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02325 - - gmx:100797186 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02325 11 49712589 49717107 Cca11g02325 11 49712589 49717107 ECH