Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02322 ATGGCCCAAAAATCCCAGAAAAACAATGGCAACATTAATCCTAACACTGTCATCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCTCCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACAGGTCGATACGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAATCCCAGAACAAAAAAGGACGACAAGTCTACCTTGGCGCTTATGATAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTCAAATACTGGGGTCAAGAAACCATTCTTAATTTTCCGTTATCGAACTACCTGAATGAATTGAAAGAAATGGGGAGTCAATCACGGGAGGAGTATATCGGATCTCTTAGGAGGAAAAGCAGTGGCTTTTCTCGCGGAATTTCGAAATACAGAGGTGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTAGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACTTACGCTACCCAAGAAGAAGCTGCTACAGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGATATATTAAGTGGCTTAAGCCcaacaacatcagcaacaacaacaGTGACCAGATTAATATTAATATTAATCTCACTGACATAAACCATAATTGTAGTAGCAACTTCACCCCAAACCCCAATCAGGAGCAAGAATTAGGCTTACTCCACCAGGACTCACTAATTAATAACATTGTAGAAGAAGCTGCCACGTTGGTGCCACATCAGCCTCGTCAAGCAGGTGCCACGTCAGCATTGGAGCTGCTACTTCAGTCATCGAAGTTTAAGGAAATGTTGGAGATGACATCTGTGGGCAATGTGTCAACAACACAGGTAGAGTCTGATGAGTTGCCACAGTGCACATTTCCTGACCACATTCAGACATACTTTGAGTATGAAGATTCCAACAGGTATGAGGAAGGGGATGATGTCATGTTCAACGAGTTCAGCTCCATTGTTCCGTTTTACCATTGTGACGACGAGTTCGAGAGTTGA 1077 0.4327 MAQKSQKNNGNINPNTVITKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDNEEAAAHAYDLAALKYWGQETILNFPLSNYLNELKEMGSQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNISNNNSDQINININLTDINHNCSSNFTPNPNQEQELGLLHQDSLINNIVEEAATLVPHQPRQAGATSALELLLQSSKFKEMLEMTSVGNVSTTQVESDELPQCTFPDHIQTYFEYEDSNRYEEGDDVMFNEFSSIVPFYHCDDEFES 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02322 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 342 - -
Cca11g02322 358 Gene3D AP2/ERF domain 39 107 IPR036955 GO:0003700|GO:0006355
Cca11g02322 358 Gene3D AP2/ERF domain 140 201 IPR036955 GO:0003700|GO:0006355
Cca11g02322 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 342 - -
Cca11g02322 358 CDD AP2 38 107 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 CDD AP2 140 201 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 SUPERFAMILY DNA-binding domain 140 201 IPR016177 GO:0003677
Cca11g02322 358 SUPERFAMILY DNA-binding domain 38 107 IPR016177 GO:0003677
Cca11g02322 358 ProSiteProfiles AP2/ERF domain profile. 39 105 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 PRINTS Ethylene responsive element binding protein signature 181 201 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 Pfam AP2 domain 140 191 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 Pfam AP2 domain 39 97 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 SMART rav1_2 141 205 IPR001471 GO:0003700|GO:0006355
Cca11g02322 358 SMART rav1_2 39 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02322 Cca-Chr11 49649468 49652284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02322 35 203 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.72e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca11g02322 AP2 4.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02322 K09285 - gmx:100793339 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02322 11 49649468 49652284 Cca11g02322 11 49649468 49652284 ECH