Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02313 ATGTGTCTGATTAGATTAACAGTGTTTCTATTTTTCTTTCTGGAGACTGTATATGGGAAAGAAAATGGTGGCATTGTGAATGGAAAAAGTTCACTTATTTCATTCATGTCATGCATTGTTTCAGACCCTCAAAACGCTCTAGAGAGTTGGAAGTCACGGGGTGTTCATGTTTGTGATTGGTCAGGTGTAAGATGCAACAATGCAAGTGACGTCATCATAGAGCTTGATCTCAGTGGAAGGACACTAGGAGGCACCATTTCCCCTGCTCTTGCCAACATCTCTTCCTTGCAAATTCTTGACCTTTCTGGGAACTTTTTGGTGGGTCACATTCCAAAAGAACTAGGCTATTTGGTTCACCTTGGAGAACTCAGTTTGTCGGGGAATTTTCTGGAAGGGCACATTCCCTCAGAGTTTGGTTCACTTCACAACTTGTACTACCTTGACATGAGAAGCAATCATCTTGAGGGAGAGATTCCCCCATCACTTTTCTGTAATGGAACTTCACTGAGCTATGTAGACCTCTCTAATAATTCCTTAGGGGGACAAATCCCCTTGAACAATGAGTGTATCCTTAAAGAGCTCAGGTACCTGTTACTTTGGTCTAACAAGCTTGTAGGCCAAGTTCCTTTAGCTCTTTCAAACTCTACCAAGCTTAAATGGCTTGATTTGGGGTTGAATATGTTCAGTGGAGAGCTTCCTTCTAAGATTGTACATAATTGGCCACAACTACAATTCCTCTACTTGTCATACAACAATTTTGCTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCTTCGTTGATGAATTTATCATACTTTGAAGAACTTGAATTGGCGGGAAACAATCTTGGTGGGAAGCTGCCTCATAATGTTGGTGATCTTCCCTCCAGCCTGAAAGAACTTCACCTAGAAAAAAATCTCATATATGGCTCTATACCTCCACACATTTCTAACCTTGTCAATCTGACTTTCTTGAAGTTGTCCAATAATCTATTAAATGGATCAGTCCCTTCAAGCCTTTCCCACATGAATAGACTAGAAAGAATTTATTTGTCAAACAATTCACTATCTGGTGAGATACCTTCAACCCTTGGTGACAATCAGCATCTGGGGCTTCTAGACATGTCAGGAAACAAGCTATCTGGTCCAATACCAGATAGTTTTGCAAATCTCTCACAGTTAAGGAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTATCTCACAACAAGATAACTGGGTTGATTCCTGGTGAAGTTGCAGCCTTGAATAGCTTGAAACTATACTTGAATTTATCAAACAATAACTTACATGGTTCTTTACCATTAGAACTCAGCAAAATGGACATGGTGCTATCTATTGATGTATCCAAGAACAATCTCTCTGGCAGCATTCCACCACAACTTGAAAGTTGCACAGCACTGGAGTACCTCAACCTCTCTGGTAATTCCTTTGAAGGCTCTCTCCCTTATTCTTTAGGCCAATTGCTCTATATTCGAGCACTTGATGTGTCTTCAAATCATTTGATTGGGGAAATACCAGATTCCTTTAAGTTGTCTTCCTCTCTCAAGGAACTTAATTTCTCTTTCAACAAATTCTCAGGGAATGTCTCAAATAATGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTTGGAAATAGTGGTCTATGTGGCCCTTTTGAAGGCATGCAAAGATGTCACAAGAAACGTAGTTATCATTTGGTGTTCTTGTTGATTCCTGTGTTACTTTTTGGCACACCTCTCATATGCATGTTTTTAAGGTACTCAATGGCAATCAAGTCAAAAGTTACCAAGCAATGTTCATTTGTTAGCAGAGGTGATTTGGAGAATAATGAAGAGGGAACAAAAGAGCTCAAGTACCCTAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGGCTTCAGTTCTTCAAGCTTAATTGGTTCAGGCAGGTTTGGACAGGTCTACAAAGGAATGCTTCATGATAATACAAGAGTAGCTGTGAAGGTGTTGGATACAACAGGTGGTGAGATGTCAAGGAGCTTTAGAAGGGAATGTCAAATCCTGAAAAAGATAAGGCACAGAAATTTGATAAGGATCATCACAATTTGCTGTAGGCCAGAATTTAATGCCATTGTTTTTCCCTTGATGCCAAATGGTAGCCTTGAGAGGCACCTATATCAAAGCCAAAGATTTGATGTGGTTCAGTTAGTAAGAATCTGCAGTGATGTAGCTGAGGGAATTTCCtatctgcaccattactctccagtgaaagtagtgcattgtgatcttaagccaagtaatatactccttgatgaagatatgaCAGCTTTGGTTACTGATTTTGGAATTTCAAGGCTTCTGCATAGTGATGAGAATATTTCCACAAGTAACTCAGCATCATTCAGTTCAACACACGGTTTGTTATGTGGCTCGGTTGGTTATATAGCTCCTGAATACGGAATGGGAAAGCATGCTTCAACTGAGGGTGATGTGTACAGTTATGGAGTACTTGTGTTGGAGATGGTCTCAGGAAGACGCCCCACAGATGTCCTCAGCCATGAAGGCTCAAGCTTGTGTGAGTGGATTAAGAGACAATACACACAACAACACCAACTTCAAAACCTTGTTGAACAAACACTGCAAAGGTTCTCTCCTTGTGGCATACCATATCATCGTAACAAAATTTTGAAAGACGTTATTCTGGAACTCATTGAGCTAGGGCTTCTCTGCACACAGCATAATCCTTCAACAAGACCAACCATGTTGGATGTAGCACAAGAGATGGGTAGGTTGAAGGACTACCTTACTAAGTCAACCTTGCCTCGTCATTCAAGTCAATCCCCACATTGA 2913 0.3941 MCLIRLTVFLFFFLETVYGKENGGIVNGKSSLISFMSCIVSDPQNALESWKSRGVHVCDWSGVRCNNASDVIIELDLSGRTLGGTISPALANISSLQILDLSGNFLVGHIPKELGYLVHLGELSLSGNFLEGHIPSEFGSLHNLYYLDMRSNHLEGEIPPSLFCNGTSLSYVDLSNNSLGGQIPLNNECILKELRYLLLWSNKLVGQVPLALSNSTKLKWLDLGLNMFSGELPSKIVHNWPQLQFLYLSYNNFASHDGNTNLEPFFASLMNLSYFEELELAGNNLGGKLPHNVGDLPSSLKELHLEKNLIYGSIPPHISNLVNLTFLKLSNNLLNGSVPSSLSHMNRLERIYLSNNSLSGEIPSTLGDNQHLGLLDMSGNKLSGPIPDSFANLSQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPGEVAALNSLKLYLNLSNNNLHGSLPLELSKMDMVLSIDVSKNNLSGSIPPQLESCTALEYLNLSGNSFEGSLPYSLGQLLYIRALDVSSNHLIGEIPDSFKLSSSLKELNFSFNKFSGNVSNNGAFSNLTIDSFLGNSGLCGPFEGMQRCHKKRSYHLVFLLIPVLLFGTPLICMFLRYSMAIKSKVTKQCSFVSRGDLENNEEGTKELKYPRISYRQLREATGGFSSSSLIGSGRFGQVYKGMLHDNTRVAVKVLDTTGGEMSRSFRRECQILKKIRHRNLIRIITICCRPEFNAIVFPLMPNGSLERHLYQSQRFDVVQLVRICSDVAEGISYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLLHSDENISTSNSASFSSTHGLLCGSVGYIAPEYGMGKHASTEGDVYSYGVLVLEMVSGRRPTDVLSHEGSSLCEWIKRQYTQQHQLQNLVEQTLQRFSPCGIPYHRNKILKDVILELIELGLLCTQHNPSTRPTMLDVAQEMGRLKDYLTKSTLPRHSSQSPH 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02313 970 PANTHER OS04G0122200 PROTEIN 18 953 - -
Cca11g02313 970 Gene3D Ribonuclease Inhibitor 260 592 IPR032675 -
Cca11g02313 970 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02313 970 SMART serkin_6 661 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02313 970 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 18 953 - -
Cca11g02313 970 Gene3D Phosphorylase Kinase; domain 1 640 735 - -
Cca11g02313 970 SUPERFAMILY Protein kinase-like (PK-like) 642 947 IPR011009 -
Cca11g02313 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Cca11g02313 970 SUPERFAMILY L domain-like 335 577 - -
Cca11g02313 970 Gene3D Transferase(Phosphotransferase) domain 1 737 965 - -
Cca11g02313 970 SUPERFAMILY RNI-like 74 383 - -
Cca11g02313 970 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Cca11g02313 970 Gene3D Ribonuclease Inhibitor 190 259 IPR032675 -
Cca11g02313 970 SMART LRR_typ_2 418 440 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 393 417 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 321 344 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 345 369 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 141 165 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 117 140 IPR003591 -
Cca11g02313 970 SMART LRR_typ_2 191 215 IPR003591 -
Cca11g02313 970 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Cca11g02313 970 Pfam Leucine Rich Repeat 493 512 IPR001611 GO:0005515
Cca11g02313 970 Pfam Leucine Rich Repeat 419 437 IPR001611 GO:0005515
Cca11g02313 970 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Cca11g02313 970 ProSiteProfiles Leucine-rich repeat profile. 419 440 IPR001611 GO:0005515
Cca11g02313 970 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02313 970 Pfam Leucine rich repeat 347 406 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02313 Cca-Chr11 49576674 49580992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02313 29 960 Receptor kinase-like Gene Family AT3G47570 33.949 1.13e-154 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca11g02313 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02313 - - gmx:100792446 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02313 11 49576674 49580992 Cca11g02313 11 49576674 49580992 ECH