LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g02307	ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTCATTCATGGCCACGAAGAGCCCAAGCCTTTGAAGAACTTGGATGGACAGGTGTGTGAGATATGTGGCGATGACGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCCTGCAACGAGTGTGGTTTTCCGGCATGCCGGCCATGCTATGAGTATGAAAGAAGAGAAGGAAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATTGAACATGAATTCAACATTGAGGACCAAATGAACAAGCATAACCACTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTACGGAAGAGGTCCTGAAGATGATGAGAATGCTCAATTCCCAGCTGTTATTTCTGGCGGTCGCTCTCGCCCTGTTAGTGGGGAGTTCCCAATAGCGTCTCATTATGGTGATCAGATGTTAGCTTCCTCATTGCATAATCGAGTGCACCCATATCCTGCGTCTGATCCTCGAAATGGAAAGTGGGATGAAGTCAAAGAAGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCTAGGCAGCCACTGTCGAGGAAGGTACCAATAGCATCCAACAAAGTGAATCCTTATAGGATGGTGATTGTGGCACGGCTTGTTATCCTCGCCTTCTTCCTCCGTTATAGAATTATGAATCCTGTACACGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCATTAAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTAGCCATGGATTACCCGGTTGATAAGATATCGTGTTACATTTCTGATGATGGTGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTTCCAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATAGAACCTCGGGCACCAGAGATGTACTTCTGTGAGAAAATTGACTATCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGCCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCAATTGTGGCAAAAGCTCAGAAGGTTCCTCCAGGAGGGTGGATTATGCAGGATGGAACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTTTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCTGGATTCCAACACCATAAGAAAGCTGGAGCCATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCACCTTTCATGCTGAACTTGGATTGTGATCATTATGTAAATAACAGCAAGGCTGCTCGAGAGGCCATGTGCTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGGCATGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGGTGTGTATTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGAAGGCCAAGCGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTCAAGTATGAAGGGAATGATAGAAATGGAGAGGCAGCAAGTCTAAGAGGAATGGATGATGACAAAGAGGTGCTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCATGTAATCAGCTGCGGATACGAAGATAAAACTGAATGGGGAATTGAGCTAGGATGGATTTATGGGTCTATCACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGAGAGCCGCATTCAAGGGTACTGCTCCTATTAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCGCCATTGCCCTTTATGGTATGGCTATAAGGAAGGGAAGCTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACAGTCTACCCTTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGTTTACTCACAGATAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTCGTTGCTCTCTTCTCTTCAATCATTGCAACCGGCCTTCTTGAATTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCACACCTCTTTGCTGTCATACAAGGGATTCTGAAGGTTCTGGCAGGAATTGACACCAACTTCACTGTAACATCCAAGGCAGCAGATGATGAAGAATTTGGAGAATTATACACCTTCAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTTCATCTGTATCCATTCCTTAAAGGTTTGATGGGCCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCAGTACTATTGGCTTCCATTTTCTCTTTGCTTTGGGTAAGAATTGATCCATTTGTATTAAAAACTAAGGGACCTGATACCAAGCTGTGTGGAATCAACTGCTGA	3105	0.449	MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDQMNKHNHSAEAMLHGKMSYGRGPEDDENAQFPAVISGGRSRPVSGEFPIASHYGDQMLASSLHNRVHPYPASDPRNGKWDEVKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASNKVNPYRMVIVARLVILAFFLRYRIMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFSRKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKKAKRPKMISCDCCPCFGKRKKVKYEGNDRNGEAASLRGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGILKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC	1034

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g02307	1034	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Cca11g02307	1034	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	339	801	IPR029044	-
	Cca11g02307	1034	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	109	IPR013083	-
	Cca11g02307	1034	CDD	mRING-HC-C4C4_CesA_plant	35	85	-	-
	Cca11g02307	1034	Pfam	Cellulose synthase	326	1028	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Cca11g02307	1034	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	473	617	IPR029044	-
	Cca11g02307	1034	SUPERFAMILY	RING/U-box	21	109	-	-
	Cca11g02307	1034	PANTHER	CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING]	1	1034	-	-
	Cca11g02307	1034	ProSiteProfiles	Zinc finger RING-type profile.	37	83	IPR001841	-
	Cca11g02307	1034	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	1	1034	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g02307	Cca-Chr11	49533228	49544942	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca11g02307	1	1034	Cell Wall Biosynthesis	AT5G17420	85.811	0.0	1837

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g02307	K10999		-	gmx:100779834	2088.15

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g02307	11	49533228	49544942	Cca11g02307	11	49533228	49544942	ECH

Showing 1 to 1 of 1 entries