Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02305 ATGCAGCAAGGTGATCAAACGGTGTTGAGCTTGAGGCCCGGTGGTGGTAGAGGCGGCAGGCTCCTCGGTCCTCGATTTGACTCCTCATCCACGTCTTCTGCTTCCCCCGCTTTTGGCTCCTTTTCCGCTGATCTTCCTCACTTGCGTCCTCATGGCGCCGCTCCTTCTCCCTTCTCTATCAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTGCGATATACCAGGGAACAGCTCTTACAGCTTAGAGAGGGTGTTGATATCCTTGACGACATTTTAAAGATCAAGCAAGATATTGAAGCTGAGCTTTTTGGTGAAGATCCAAGTTGGGGCCGCTCAGAAAACAACCCTTCTCTTCAATTTCAAAATCGATATTCTGAGCCAGATAACCGTGACTGGCGTGGACGATCTGGACAACTTTCTGGTAATGCAGATGAGAGGACTTGGGATAATCTCAGAGAGAATAGGGAGTTTGGCAATACTAGTCAGATTAATCGTCAAGATCAACTGAATTCTCAGTTTGGCGGACCTACTCCAACACTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAAGTCTCTCTGAAAAGGATCGTGTCTTAAAGACAGTTAAGGGAATACTGAATAAGTTGACTCCTGAGAAATTTGATCTCCTGAAGGGTCAGTTGATTGATGCTGGCATTACATCTGCTGACATATTGAAGGAAGTTATTTCACTAATATTTGATAAGGCAGTGCTGGAACCAACATTTTGCCCCATGTATGCTTTGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGGTGGGAAAGAAATCACTTTTAAGCGAGTACTTTTGAATATCTGCCAGGAGGCTTTTGAAGGTGCAGATAAACTAAGGGAAGAATTGAGACAGATGACTGCTCCTGACCAGGAGATGGAGCGAAGGGACAAGGAAAGACTTCTGAAGATTCGAACCCTTGGAAACATCCGTTTAATTGGTGAGCTGTTGAAGCAAAAAATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGACCCCCTGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATATGTCAATTTTTCAACACTATTGGTAAGCAGCTCGATGAAAGCCCAAAATCTCGACGTATAAATGATATGTACTTTAGCCGGTTGAAAGAATTGAGCACCAACCCCCAACTTGCACCACGGCTGCGGTTTATGGTTCGTGATATTCTAGAATTGCGCACTAATAACTGGATTCCTAGACGTGAAGAGGTGAAAGCTAAAACCATCACTGAAATTCATTCAGAGGCAGAAAAGAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATCAGAAATCCCCGTGGTGTAGCTTCTGGGGTTCAAGGAAATGCCACTCCAGGTGGCTTCCCAATTGCCCGACCTGGTACAGGTGGTTTGATGCCTGGGATGCCAGGGACCAGGAGGATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGGTGCCTAGGACAAGATCAATGCCAAGAGGGGACATGTCAGGCATGCAATCTGGAGGACGAGGCCAATCTCCTTTCCTTTCCAAGACATCAACTGTCAACTCGAAGTTACTACCTCAAGGTAGTGGTGGTCTTATAAGTGGGAGAAGCAGTGCCCTGGTGCATGGAGGCACTCCTTCTGCTCGTCCGGCAAACCTTGGTTTTAGTACTGAGCCTACACCTCAAATCCCGGAGAAAGCTGTTAAAGCTGTTCCTGCCATATCCACTGAGAAGCCACAAGCTCCTCCAGCTACAAAAGTGAATAGTGATGAACTTCAACGTAAAACTGTTTCTCTTTTGGAAGAATATTTCAGTGTTCGGCTTTTGGATGAGGCATTACAGTGTGTGGAGGAACTAAAATCTCCAGCTTATTACCCTGAGGTTGTCAGGGAAGCCATTTCCCTTGCACTAGATAAAAGTCCCCCATGCGTTGAATCTGTTGCCAATCTTCTTGAATATCTGTTCATTAAGAAGATTCTTTCAGCCAGAGACATAGAGACTGGGTGCATGTTATTTGCTTCTCTTCTGGATGATATCGGCATAGATTTACCTAAAGCACCAAATAATTTTGGTGAGATAATAGGGAAACTAGTATTGGCTGGGGGTTTGGATTTTAAGGTGGTGAGAGAAATCCTTAAGAAGGTGGATGATGACCGGTTCCAGAGAGCAATATTTTCCTCTGCGATGCAGGTAATTAGCTCTGCATCTGGGCAAGCTGTGTTGGACTCACAAGCATCTGATATTGAGGCCTGCCAGAGTCTGCTCAAGTGA 2349 0.4598 MQQGDQTVLSLRPGGGRGGRLLGPRFDSSSTSSASPAFGSFSADLPHLRPHGAAPSPFSIKAGDSRFEGRERVRYTREQLLQLREGVDILDDILKIKQDIEAELFGEDPSWGRSENNPSLQFQNRYSEPDNRDWRGRSGQLSGNADERTWDNLRENREFGNTSQINRQDQLNSQFGGPTPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDAGITSADILKEVISLIFDKAVLEPTFCPMYALLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADKLREELRQMTAPDQEMERRDKERLLKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLAPRLRFMVRDILELRTNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNPRGVASGVQGNATPGGFPIARPGTGGLMPGMPGTRRMPGMPGIDNDNWEVPRTRSMPRGDMSGMQSGGRGQSPFLSKTSTVNSKLLPQGSGGLISGRSSALVHGGTPSARPANLGFSTEPTPQIPEKAVKAVPAISTEKPQAPPATKVNSDELQRKTVSLLEEYFSVRLLDEALQCVEELKSPAYYPEVVREAISLALDKSPPCVESVANLLEYLFIKKILSARDIETGCMLFASLLDDIGIDLPKAPNNFGEIIGKLVLAGGLDFKVVREILKKVDDDRFQRAIFSSAMQVISSASGQAVLDSQASDIEACQSLLK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02305 782 MobiDBLite consensus disorder prediction 25 39 - -
Cca11g02305 782 Pfam MIF4G domain 203 429 IPR003890 GO:0003723|GO:0005515
Cca11g02305 782 MobiDBLite consensus disorder prediction 107 147 - -
Cca11g02305 782 ProSiteProfiles MI domain profile. 617 739 IPR003891 -
Cca11g02305 782 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 781 - -
Cca11g02305 782 MobiDBLite consensus disorder prediction 520 540 - -
Cca11g02305 782 MobiDBLite consensus disorder prediction 553 587 - -
Cca11g02305 782 Pfam MA3 domain 618 730 IPR003891 -
Cca11g02305 782 Gene3D - 611 777 - -
Cca11g02305 782 SUPERFAMILY ARM repeat 197 431 IPR016024 -
Cca11g02305 782 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 781 IPR045208 GO:0003743
Cca11g02305 782 SMART ma3_7 618 730 IPR003891 -
Cca11g02305 782 SMART if4_15 203 429 IPR003890 GO:0003723|GO:0005515
Cca11g02305 782 MobiDBLite consensus disorder prediction 112 127 - -
Cca11g02305 782 SUPERFAMILY ARM repeat 613 769 IPR016024 -
Cca11g02305 782 MobiDBLite consensus disorder prediction 1 39 - -
Cca11g02305 782 Gene3D - 194 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02305 Cca-Chr11 49496872 49503554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02305 1 780 Eukaryotic Initiation Factors Gene Family AT5G57870 64.994 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02305 K03260 - gmx:100781275 1316.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02305 11 49496872 49503554 Cca11g02305 11 49496872 49503554 ECH