Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02301 ATGTGGAAGAAGCGTTGCGGCGAGAGTTACAAAAACAGCAAAATCGAAGGGAGTTGGAGAGAGCACTATAGAAATCTCAATGCAAAGATCAGTGGGGTTCTCGACTTCAACACAAACGAACAAACAACACTGCTGGATGCTGTTCTTCATGGTGCAAAGCGCCAAGCTGTGACACCTCCTGCAATTGATGACAGTGAACATTCTTCATTTAGTTTACAAAAGAAACCTAAGCATGAGTGGAGTTGTGCTCTTTGTCAGATAATTACTACCACTGGTGAGCAAGCCTTGAAGGATCATCTTCAAGGGTTGGAAGCAAGACTAGAGAACCAAATACTTCAACCTTATTTAACCCCCACAAACACAAGCGTACCAGAATCTACAAAAGAGGATCAAGCTGCGCAGGAAATCCAAGATCTAGGTTGTCTAGAGAACAAGAGTAAAACAGCTACTGAGCAAGAAGCTGTTCGGGAAGCATATGCCTTGACAACAAAGACGTTTAAATTTTGGTGTAAAGTTAAACTTCAAGAACTTGAAGCTGAGCTACTTGAGATTAACGCAAATAATGAGAAGTTGCAACACACTTACAATGAGCTGTTAGAGTATAAGCTTGTTGTAGAGAAGGTTGGTGAGTTTTTCTCTTCAGCAAGAAGTAATGCTGTAGCTCACCAGAGGGACCTTGAAGTCTATGCAGGTGCTGAAGGGTCTCTTGACAGCCCATTATTATTGGAACAAGAGGAGACAACAACAAAGCAAGTTAAGCTGGGGTTTATATGTGGACTTGTTCCTAGGGAAAAATCAATTCCTTTTGAAAGAATTATATTTCGTGCTACTAGGGGAAATGTGTTTCTCAAACAGACTGTGGTTGAACATCCTGTTCTTGATCCTTTGTCAGGAGAGAAGGTTCATAAAAATGTATTTGTTGTCTTTTATTCTGGAGAGAGAGTTAAAAGTAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATGACTTGAGTAAACAATTTCAGACGATAACAGAGGTATACGTAATTTTTTCTTAA 1059 0.3966 MWKKRCGESYKNSKIEGSWREHYRNLNAKISGVLDFNTNEQTTLLDAVLHGAKRQAVTPPAIDDSEHSSFSLQKKPKHEWSCALCQIITTTGEQALKDHLQGLEARLENQILQPYLTPTNTSVPESTKEDQAAQEIQDLGCLENKSKTATEQEAVREAYALTTKTFKFWCKVKLQELEAELLEINANNEKLQHTYNELLEYKLVVEKVGEFFSSARSNAVAHQRDLEVYAGAEGSLDSPLLLEQEETTTKQVKLGFICGLVPREKSIPFERIIFRATRGNVFLKQTVVEHPVLDPLSGEKVHKNVFVVFYSGERVKSKILKICDAFGANRYPFSDDLSKQFQTITEVYVIFS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02301 352 Coils Coil 93 113 - -
Cca11g02301 352 Coils Coil 174 194 - -
Cca11g02301 352 Pfam V-type ATPase 116kDa subunit family 162 347 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cca11g02301 352 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 171 347 - -
Cca11g02301 352 PANTHER VACUOLAR PROTON ATPASES 171 347 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02301 Cca-Chr11 49442022 49447507 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02301 170 347 Primary Pumps ATPases(2) AT4G39080 69.274 2.16e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02301 K02154 - gmx:100805813 292.737