Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02299 ATGCAATTAATGATGGAATTCCAAGGCCATATCTTCTTCATGTGCTTATTAGTCTTTGCATTTTCATCCATTGTAGCTGTGCCAAAAGAGCAAGAACAGGATCGAATCTCAGCGCTCCCGGGGCAGCCACGTGTCGCATTCTCTCAATTCTCCGGTTATGTCACTGTGAATGACCAACATGGTCGCGCACTCTTCTACTGGCTCACTGAATCCCCCACTTCACCCAAGAATAAGCCTCTCGTTCTTTGGCTCAATGGAGGGCCGGGATGCTCATCGGTAGCATACGGGGCATCAGAAGAAATTGGGCCATTCCGTATAAACAAAACTGGTTCTTCTCTATATCTCAACAAATATGCATGGAACAGAGATGCAAATATTCTCTTTCTTGAATCGCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCTGATCTCAAAACTTCAGGGGACAAGAGGACAGCTCAGGATGCACTGATTTTTCTAATTAGATGGATGTCAAGGTTTCCACAATATAAATATAGGGAGTTTTACATTGCTGGGGAAAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAATCCATGATTATAATAAAAAGAATCCTCAAATTATTAATCTCAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAGCTACAATGATGGGATTGGAACTGTGACATATTGGTGGAGCCATTCTATTATATCTGATCAGTCATACAAATCTATCCTCAAATACTGCAATTTCACAGCAGAAGAAACATCTAAAAAATGTGATGATGTTTATAGTTATGCGGTTAACTATGAATTTGGAAATATTGATGAATACAGCATCTACACCCCTAAATGCACAACATCACAAAACAATACTGTGAGGCACATACAACGATTCAAGAATCTTCATATGATTTCAGGATATGATCCATGTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCCTAAAATATTGGAAGGATTCTGAAATTTCTGTGTTGCACATATACAAAGAGTTAATTGCTGCGGGATTGAGAATATGGGTTTTCAGCGGGGACACAGACTCTGTGGTTCCAGTGACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCAGCATCAGAACTCGTTGGTATCCATGGTACTCAGGTTATGGACAGGTGGGAGGATGGACAGAGGTGTATGATGGACTCACTTTTGCAACAGTTAGAGGAGCTGGCCATGAAGTACCTTTATTTCAGCCAAAGAGAGCTTACATTCTTTTTAAGTCCTTTTTGGCAGGAGAGGAACTACCAAAACATtaa 1383 0.4107 MQLMMEFQGHIFFMCLLVFAFSSIVAVPKEQEQDRISALPGQPRVAFSQFSGYVTVNDQHGRALFYWLTESPTSPKNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNKYAWNRDANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKKNPQIINLKGFIVGNAVTDSYNDGIGTVTYWWSHSIISDQSYKSILKYCNFTAEETSKKCDDVYSYAVNYEFGNIDEYSIYTPKCTTSQNNTVRHIQRFKNLHMISGYDPCTENYAEKYYNLPEVQKAMHANVTNIPYKWTACSDVLLKYWKDSEISVLHIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLSIRTRWYPWYSGYGQVGGWTEVYDGLTFATVRGAGHEVPLFQPKRAYILFKSFLAGEELPKH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02299 460 Gene3D alpha/beta hydrolase 30 288 IPR029058 -
Cca11g02299 460 PANTHER SERINE CARBOXYPEPTIDASE 24 19 459 - -
Cca11g02299 460 Gene3D - 312 349 - -
Cca11g02299 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 459 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Cca11g02299 460 Gene3D - 359 454 - -
Cca11g02299 460 Pfam Serine carboxypeptidase 41 453 IPR001563 GO:0004185|GO:0006508
Cca11g02299 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Cca11g02299 460 SUPERFAMILY alpha/beta-Hydrolases 27 458 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02299 Cca-Chr11 49418242 49426256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02299 317 457 Calmodulin-binding Proteins AT2G22960 29.577 2.42e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02299 K16297 - gmx:100785391 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02299 11 49418242 49426256 Cca11g02299 11 49418242 49426256 ECH