Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02296 ATGTTTGATTGTGGTCACAAGTCAGAATACATGGGTGGCCAGCGGGAAAATTTTTCGAGGTTGGATACCTTGGACTCTACACTATCTTCATCTTCTGATGCTGGAGTTATAAAATCTGGATTCAGTATTGATAAATTAAGTCATGGTGGTCATGGAAGCAGCACAACTTCTAGGTCTTTTAAAAGGGGAATGAGAAGGGGATCGGAAGGACTGAAGTCAATTGGGCGATCGCTTGGGTTGGGAGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTCTGCTTTTATGGAATAAACTCTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCAGTCATTAACGATTCAGTTCACTGTCTTGGCATAGACCGAAAGTTGGCAACAACAGTTACTACCTTAAGAACTGTGATTGATGTTTTCTATCTCATACACATGGCTCTCCAATTTCGTACCGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGTTACTTGCGGCGTTATTTCATCATTGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTAGCAACAAAGCAGGCCTTGTTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACCGCATGGGCAGGTGCTGCATATTATTTGCTGCTATACATGCTTGCCAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAAGCTTGTAGTGACAATGGGTTCAATAAAAATTTCCTATATTGTGGGAACCAGCACATGGTAGGTTATAGTGACTGGCAAAATAGGAGTGAAGCTATTCTTAATTCAAGTTGCTCTGCAGATGGTGATCATCCACCTTTTGATTATGGAATTTTCGAGCAAGTCTTGTCATCTGGCATCATTTCATCTAAGAAGTTCATCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATATTTGGCCTCATCCTCTTTGCGCTTCTAATTGGCAACATGCAGACATATCTTCAGTCTCTCACCATCAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTACTCCCGCAAGAGCTTAGAGAGCGTGTGAGACGGTATGACCAATATAAGTGGTTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGGGATATTAAGCGACATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCAATATGTGAGAGACTGAAACCATGTTTATTTACGGAGAATACTTACATTGTTCGGGAAGGAGATCCTGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACGGATGGTGGGCGGAGTGGATTTTTTAACCGCAGTTTTCTAAAGGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAACCTCCCATCTTCTACTAGAACAGTTAAGGCATTAATGGAGGTTGAGGCTTTTGCCTTAACTGCTGATGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACCTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGATGAGTCAGAGGGAGCTCATGAAAATGTTGGTGGCAGTTCCTACAGCTTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCGGCACACACTCTTCGTGGTGTACATCGCAATCGCCTTGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCCCCTGAGCCTGACTTCTCTGCAGATGATGCAGACTAA 2196 0.4335 MFDCGHKSEYMGGQRENFSRLDTLDSTLSSSSDAGVIKSGFSIDKLSHGGHGSSTTSRSFKRGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDSVHCLGIDRKLATTVTTLRTVIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLRRYFIIDFLSVLPIPQIVVWRFLQRSKGSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNGFNKNFLYCGNQHMVGYSDWQNRSEAILNSSCSADGDHPPFDYGIFEQVLSSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKIMKLRQKEEDESEGAHENVGGSSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02296 731 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 14 728 - -
Cca11g02296 731 Pfam Cyclic nucleotide-binding domain 526 616 IPR000595 -
Cca11g02296 731 Gene3D - 111 430 - -
Cca11g02296 731 SMART cnmp_10 505 636 IPR000595 -
Cca11g02296 731 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 400 411 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 418 427 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 PRINTS EAG/ELK/ERG potassium channel family signature 468 475 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca11g02296 731 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Cca11g02296 731 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Cca11g02296 731 Gene3D Helix hairpin bin 433 496 - -
Cca11g02296 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 14 728 - -
Cca11g02296 731 CDD CAP_ED 505 636 IPR000595 -
Cca11g02296 731 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca11g02296 731 Gene3D Jelly Rolls 503 623 IPR014710 -
Cca11g02296 731 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02296 Cca-Chr11 49388137 49393575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02296 1 729 Ion Channels AT2G23980 76.133 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02296 K05391 - gmx:100784309 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02296 11 49388137 49393575 Cca11g02296 11 49388137 49393575 ECH