Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02292 ATGGCTGATCCTCTCACCTCCGACCCTCTCCCCGTGCCAGACTCCAAACCAAACGATTCTCACCAACACGCCATAGAAACTCAACGACTCGCTCAATCGCCGTCCGCCGCCGAGTCACTGCGCGCTCAGTTACCCAGTCCACACCAGCCTCATACGGACTCCAATTTAGAAACCCTAGGCGGTGTTCCCTCCTCGGTTGAAACCCTTGCTGTACACCATCGTAGTGACGATTTGCAGGGGATTTCTGCTGCGCCGAACTCGGGTGACAAAGCTGAAAGTAAGGAGACAGTTGGACATCCTGAAAAGGAAATTATTGAAGGAGGCGTAGCTCAGCCACTTCAAAATCAGACAGAAAATCGGCTTCAGGCGTCTGTGTGTTCAACTCCATTGTCTGGCCTATCACCAACTTCTGTTACACAATCTTTATCATCTGTTTCTAGCCCAACTGTACGAAAACAGAAAATATCTACACCAAAGGTCAATAACGTGCATGTGCCAGAAGTAGATAAAAAAAATCCTTCTGGTGGCAAAACCTTATCGGCTGTTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTTAGACTGTTGTGCTAAGAAGATTGAATGCTGTGATCATTCAGGTCATGTGATAGAGATTGTTTATAAAAGTGAGCACAGTCATGATCCCCCACGGAAAACTAATTCTGTCAGGGAAAGCAAGTTTATGTCTTCCAGTGAACCTATTGTAGTAAACAGTGTTCCGGAGCATCCTGTCAGAGTTCTGAAGGATCCTGATCCATCCATTTCTTCAAAAGAACTTCTACAAGAAGCACCCTGCAGCACTGATAGGAAACGACAAAACTCATCTAATATCAGTGGTAATGGTAAAGTTATTTTGGAAGAGGAAAATGCAAAAGAGCCAGAGCAAAAAAAAAGAATGAAGAAAGGTGACTTAACAGATGTGGATTCTCCAAAACCTGGAAAGAAGCCCAAGTTTGTCGTACATGCAGCAGGGGATGTGGGgatatctggcgatggttaccgatggcgcaagtatgggcagaaaatggtgaagggaaatccacatcccagGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCAGAAAGCACATTGAGACCGCTGTAGATAATTCAGATGCTGTGATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCCAAAAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCGCCTGCTTCCATGAACAGTTTGCAGATGAAGAAACCCGATTCCCCACAAAACAAGAAAATTTCTACTCAATGGTCAGTGGACACCGAAGGGGAACTAACTGGGGAAGCCATGGAGCTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACACTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1503 0.4385 MADPLTSDPLPVPDSKPNDSHQHAIETQRLAQSPSAAESLRAQLPSPHQPHTDSNLETLGGVPSSVETLAVHHRSDDLQGISAAPNSGDKAESKETVGHPEKEIIEGGVAQPLQNQTENRLQASVCSTPLSGLSPTSVTQSLSSVSSPTVRKQKISTPKVNNVHVPEVDKKNPSGGKTLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHLDCCAKKIECCDHSGHVIEIVYKSEHSHDPPRKTNSVRESKFMSSSEPIVVNSVPEHPVRVLKDPDPSISSKELLQEAPCSTDRKRQNSSNISGNGKVILEEENAKEPEQKKRMKKGDLTDVDSPKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQMKKPDSPQNKKISTQWSVDTEGELTGEAMELGGEKAMESARTLLSIGFEIKPC 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02292 500 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 498 IPR044810 GO:0003700
Cca11g02292 500 SUPERFAMILY WRKY DNA-binding domain 357 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 MobiDBLite consensus disorder prediction 24 62 - -
Cca11g02292 500 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 28 498 - -
Cca11g02292 500 MobiDBLite consensus disorder prediction 254 268 - -
Cca11g02292 500 Pfam WRKY DNA -binding domain 363 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 Pfam WRKY DNA -binding domain 191 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 Gene3D WRKY domain 176 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 Gene3D WRKY domain 346 422 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 MobiDBLite consensus disorder prediction 317 347 - -
Cca11g02292 500 MobiDBLite consensus disorder prediction 132 151 - -
Cca11g02292 500 SMART WRKY_cls 361 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 SMART WRKY_cls 189 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 MobiDBLite consensus disorder prediction 242 349 - -
Cca11g02292 500 SUPERFAMILY WRKY DNA-binding domain 186 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 MobiDBLite consensus disorder prediction 1 117 - -
Cca11g02292 500 ProSiteProfiles WRKY domain profile. 184 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 ProSiteProfiles WRKY domain profile. 356 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca11g02292 500 MobiDBLite consensus disorder prediction 291 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02292 Cca-Chr11 49344118 49350358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02292 30 500 WRKY Transcription Factor Family AT4G30935 50.509 1.16e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca11g02292 WRKY 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02292 - - gmx:100127377 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02292 11 49344118 49350358 Cca11g02292 11 49344118 49350358 ECH