Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02291 ATGCAAGAACCGGAACGGCAAACCATCGTGAAGAAAAAATGCGATGCAGGAGCGTCAAAGACGTACCCCCAGCAGGCTGGTACCATTCGCAAGAATGGCTACATCGTTATCAAATCCAGGCCTTGCAAGGTTGTAGAAGTTTCTACATCAAAAACAGGCAAGCATGGACATGCAAAGTGCCACTTTGTTGCAATTGATATTTTTAATGGGAAAAAGCTTGAGGATATTGTTCCATCATCCCACAATTGTGACGTTCCACATGTAAATCGCACTGACTATCAGTTGATTGATATATCTGAAGATGGCTTTGTGAGTCTGTTGACTGATAATGGAAATACCAAGGATGATTTGAAGCTTCCCACTGATGAGTCACTACTTGCTCAGattaaagatggattttctgaaggaaaatatcttgtggtttctgtcatgtctgcaatgggagaAGAACAGATTTCTTCCTTGAAGGATATTGGTCCCAAAAATTAG 489 0.3661 MQEPERQTIVKKKCDAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDESLLAQIKDGFSEGKYLVVSVMSAMGEEQISSLKDIGPKN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02291 162 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 87 156 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cca11g02291 162 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 14 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cca11g02291 162 TIGRFAM eIF_5A: translation elongation factor IF5A 19 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cca11g02291 162 PANTHER BNAA07G09420D PROTEIN 14 158 - -
Cca11g02291 162 PIRSF Transl_init_eIF5A 1 159 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cca11g02291 162 Gene3D - 88 161 IPR012340 -
Cca11g02291 162 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 52 59 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cca11g02291 162 CDD S1_eIF5A 88 158 - -
Cca11g02291 162 SUPERFAMILY Translation proteins SH3-like domain 17 95 IPR008991 -
Cca11g02291 162 SUPERFAMILY Nucleic acid-binding proteins 88 158 IPR012340 -
Cca11g02291 162 Gene3D - 4 87 IPR014722 -
Cca11g02291 162 SMART eIF_5a_2 87 156 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02291 Cca-Chr11 49332840 49336562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02291 15 161 Eukaryotic Initiation Factors Gene Family AT1G13950 89.796 6.55e-97 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02291 K03263 - gmx:100305510 292.737