Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02290 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGCACTCTTGTTCAAGCATTTGGCATCTCAGCAACCAAACACTGATGAGTTCTACGTGTCTGAGTTCTTTAGGAACATGAGTTTAACATCCTCCAAAGCCTACAATTTCTCTGCTTCTGTTTGTTCATGGCAAGGGGTTTCCTGTGATGCCAATAGAGAACATGTTGTTGAGTTAGTCCTTTCTGGTATGGACCTCTCTGGCACTATACCTGATAACACCATAGGCAAGCTAGGAAAGCTTCAATCTTTGGATCTTAGCTACAACAAAATCACTAGCTTGCCTTCAGATTTCTGGAGTTTGAGCTCCCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAACAACATTGGCAACTTTGGTTTGCTTGAAAGCTTTGACTTGTCCAGCAACAATTTATCGGAAGAAATTCCTGAAGCTCTAGGCTCACTGCTGAGTCTTCGGGTCCTCAAACTTGACCACAACAGGTTTGCACACAACATACCTTCTGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCACAAGGTTTTGGTGCTGCTTTTCCTAAGCTTAGGGTTTTGAACCTTTCTAGGAATAATATGTATGGACGTGTTTCAGATATTTCTGGGCTAAAGTCCCTTGTGAGTCTCAACATATCAGGGAATTCGTTTCAGGGTTCTATTATGGATGTGTTTCAGGGAAGGTTGGAGGTTCTGGACCTCAGCAGAAACCAATTTCAAGGTCACATTCCTCAGGTACAATACAACTTTAGTAGTTACAATTGGTCTCAATTAGTTTACCTGGATTTGTCAGAGAATAAGCTCAGTGGGGAATTTTTTCAAAATTTGAATGATACCTTGAATTTAAAGCATATTAATCTTGCACACAATAGATTTTCCAGACAGAAATTCCCCCAGATTGAAATGCTCCTGAAATTGGAATATCTGAACTTGTCCAAAACTAGCCTTGTTGATGAAATTCCTGATGAAATCTCACAATTAAGCAATTTGAATGCACTTGATCTTTCTATGAATCATCTTAGTGAGAAAATTCCCTTACTGATGAATGAAAACCTCCAAGTCCTTGACCTCTCAAACAACAATTTGAGTGGAGCAGTCCCTCCATCTGTCTTGAAGAAACTTCCATTTATGGAGAAGTTCAACTTCTCTTACAACAACCTTACCCTCTGTGCTTCTGAAATCACACCTGAGATCCTACAAACAGCATTCTATGGATCATTGAACAGTTGTCCAATAGCTGCAAACCCGCGGCTTTTCAGAAGAAGAGACACTGAAAACAAGGGAATGAAGCTAGCCCTGGCATTGACCTTCTCAATGATTTTTGTGCTTGCCGGGCTTTTGTTTCTAGCATTTGGCTGCAGAAGGAAAACAAAAATGTGGGAATTCAAGCAAGCTTCATACAAAGAAGAGCAAAACATTTCAGGTCCCTTCTCATTCCAGACTGATTCTACAACTTGGGTGGCTGATGTGAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCTTTGTTGAATATCACATTTGCTGATCTCCTGGCTGCGACTTCAAATTTTGATAGGGGCACCCTTTTGGCTGAAGGAAAATTTGGACCAGTCTATAGAGGTTTTCTGCCTGGTGGTATTCATGTGGCAGTTAAGGTTTTGGTTCTTGGTTCTACTTTGACAGATGAAGAGGCTGGAAGAGAGTTAGAGTTTCTTGGCAGAATCAAGCACCCCAATCTTGTTCCCTTAACAGGATATTGTGTAGCTGGAGATCAGAGAATTGCTATATATGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTATGACTTGCCACTTGGTGTACAAAGCACGGATGATTGGAGCACAGACACATGGGAAGAAGATAACAACAATGGCATTCAAAATGCTGGTTCTGAAGGGTTACTAACATCTTGGAGATTTCGCCACAAGATTGCACTTGGCACAGCTCGAGCATTGGCATTTTTGCACCATGGTTGCTCTCCTCCAATAATTCATAGAGCTGTTAAGGCTAGCAGTGTTTATTTGGACTATGATTTGGAGCCAAGGTTGTCTGATTTTGGATTAGCCAAGATTTTTGGAAGTGGCTTGGACGATGAAATTGCTCGTGGCTCACCAGGTTATGTTCCACCAGAGTTTTCTCAACAAGAATTTGACACACCAACACCAAAATCTGATGTGTACTGTTTTGGGGTGGTTCTGTTTGAACTAGTAACGGGAAAGAAGCCAGTTGGAGATGATTACCCTGATGACAAAGAAGCAACTTTGGTAAGCTGGGTGAGAGGACTTGTGAGAAAAAACCAAGGTTCAAGAGCTATTGATCCAAAGATTCGTGACACAGGACCAGATGAAGAAATGGAAGAGGCTCTTAAGATTGCTTATCTTTGCACTGCTGATCTTCCCTTCAAGCGACCAAGCATGCAACAGATTGTTGGACTTCTAAAGGATATTGAACCTACTGCATGA 2562 0.4153 MGLGVFGSVLVLALLFKHLASQQPNTDEFYVSEFFRNMSLTSSKAYNFSASVCSWQGVSCDANREHVVELVLSGMDLSGTIPDNTIGKLGKLQSLDLSYNKITSLPSDFWSLSSLKSLNLSSNQISGSLTNNIGNFGLLESFDLSSNNLSEEIPEALGSLLSLRVLKLDHNRFAHNIPSGILKCQSLVSIDLSSNQLNGTLPQGFGAAFPKLRVLNLSRNNMYGRVSDISGLKSLVSLNISGNSFQGSIMDVFQGRLEVLDLSRNQFQGHIPQVQYNFSSYNWSQLVYLDLSENKLSGEFFQNLNDTLNLKHINLAHNRFSRQKFPQIEMLLKLEYLNLSKTSLVDEIPDEISQLSNLNALDLSMNHLSEKIPLLMNENLQVLDLSNNNLSGAVPPSVLKKLPFMEKFNFSYNNLTLCASEITPEILQTAFYGSLNSCPIAANPRLFRRRDTENKGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQASYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVLGSTLTDEEAGRELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEDNNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQQEFDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKEATLVSWVRGLVRKNQGSRAIDPKIRDTGPDEEMEEALKIAYLCTADLPFKRPSMQQIVGLLKDIEPTA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02290 853 SUPERFAMILY L domain-like 42 423 - -
Cca11g02290 853 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 851 - -
Cca11g02290 853 SMART LRR_typ_2 331 355 IPR003591 -
Cca11g02290 853 SMART LRR_typ_2 112 136 IPR003591 -
Cca11g02290 853 SMART LRR_typ_2 89 111 IPR003591 -
Cca11g02290 853 SMART LRR_typ_2 378 401 IPR003591 -
Cca11g02290 853 SMART LRR_typ_2 160 184 IPR003591 -
Cca11g02290 853 SMART LRR_typ_2 232 255 IPR003591 -
Cca11g02290 853 Gene3D Ribonuclease Inhibitor 278 444 IPR032675 -
Cca11g02290 853 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Cca11g02290 853 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Cca11g02290 853 Pfam Leucine rich repeat 70 125 IPR001611 GO:0005515
Cca11g02290 853 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca11g02290 853 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Cca11g02290 853 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Cca11g02290 853 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
Cca11g02290 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Cca11g02290 853 Pfam Protein tyrosine and serine/threonine kinase 552 844 IPR001245 GO:0004672|GO:0006468
Cca11g02290 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 851 - -
Cca11g02290 853 PRINTS Leucine-rich repeat signature 92 105 - -
Cca11g02290 853 PRINTS Leucine-rich repeat signature 355 368 - -
Cca11g02290 853 Pfam Leucine Rich Repeat 379 398 IPR001611 GO:0005515
Cca11g02290 853 ProSiteProfiles Leucine-rich repeat profile. 379 400 IPR001611 GO:0005515
Cca11g02290 853 SUPERFAMILY Protein kinase-like (PK-like) 525 846 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02290 Cca-Chr11 49328990 49332380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02290 62 850 Receptor kinase-like Gene Family AT4G39400 35.112 1.43e-111 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Cca11g02290 PK_Tyr_Ser-Thr 8.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02290 - - gmx:100797738 1530.77