Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02286 ATGGCTATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCTGATGGCCTCCTCGAGATCTGCGAGCGAGTTTACGTTTTTGATTGTTGCTTCACCACGGATGCTTGGAATGAAGAGAATTACAAAGTGTACATGGATGGGATAGTTCGTCAGCTTAGGGAGAACTTGCCTGATGCTTCGATTCTGATTTTCAATTTCCGCGAGGAAAATATGAAGAGTCAGATGGCAAATATAATGTCTGAGTACGACATTACTATCATGGACTACCCTCGCCACTACGAGGGTTGTCCCGTGCTCAAAATGGAGCTCATCCACCATTTTTTGAGGTCTGGTGAAAGCTGGCTTTCGCTTGGCCAGCAGAATGTGTTGTTGATGCATTGTGAACGTGGCGGATGGCCCGTTTTGGCTTTCATGTTGTCTGCATTGTTGATTTATAGGAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGGTTTACAGGCAGGCTCCGCACGAGCTTTTGCATTTGTTGACGCCCTTGAATCCAGTCCCTTCGCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTCGCTATAGATTGGCCACCCCTGGACAGGTCACTCATGTTGGACTGCGTCATTCTTAGATGCTTCCCAAACTTTGATGGGGAGGGTGGTTGTCATCCTCTGTTTAGAATTTATGGACAGGATCCCTTTAGTGCTGATAAAAATCCAAAAATGTTGTACTCAACGCCAAAGAGAAGCAAAAATGTCCGGGCCTACAAGCAGGGAGAGTGTGAACTTATTAAAATCGATATCAATTGCCATATTCAAGGAGACGTTGTCATTGAAGGCATTAACTTGAATGGTGACATGGAGCATGAAATGATGATGTTTCGAGTTATGTTCAACACAGCTTTTGTTAGATCTAATATTTTAATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTTAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCGGATAGTACCTCATGCTTTGAGGAGAAGGAAGGACTGCCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGGACCCCAAGGCAGATGTTGCACTAAATGTGCTCCAACAGATAAGTGCTTCAGCTATGAATGACAGATTGGAAACAATTTCTGATCAGTATGCAGAAACTAGCCCTTTATTGCATGAAACAAGTCCTAGAACGCCTCAGGGATATTTGAATGAAGAGAGACAGTGTTTATCCTCAACTAAGAGATCCTCAGATAATGATATGAGTAGAAAAGAGGATAAGACCAACAAGGTCGAAGGCATGCCACAACAAGGTCAAGGATATCAAGAGACAACCAAATCTTTTGAAAGAACCTTGCAATCTAATAAATGTCCAACAGGACCTACAAATCTTGGCATAAAACTGCATGCACCACATCCTGCCTTGTCTAGTTCTGTTGATACTTCTTTTTCCCCTCGAACACCTCCCTTGGGGCCTCGATCCATTGGTGCTAAAGAAGTTCATGATTCTCCTCTGCAAACGGAATCACCCCCCTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCACCTAATTCTATCCATACACCTGGGACCCAATCCTCATCCACTATTCATAGTAAGTCACCAGCTGACGCCATTTCCTAtccttcagcttcagcatctacttcaactcatccatctccttcactttctTCCAAAAATGTGAATGAGATTCCTCCTATTAGAACAAGATTAGAGTCTTCCCCTTCACGAcctccaactccaccacctcctcctacccctccACTAAAGGATCATAGACTAGTTCAAGCTAAAcctcctccacctcctccccctccAAAAACAGAACAACTTGTTAAAGTTGGACCACTTCCTTCTCCTCTATCTCCTATGAACGTGGAGCCACAGGTTAGAGATGGACCCTCTCCGCCCCCTCCCCCTCCTCTAAAAGAGGAGCAACCTGTTAGATTTAAGcctcctccacctccaccacctcctTGTCTCTCTGGGAAAGTTGCAGGTTCTACTATAGTaccaccaccaccaccaccacctccacTTTCCTATGATCACACTAATTTTTCATTGCAAAAGTCTCCAGCTGCTCCTACAATACCTGCTGCTCCACCTCCTCCTGGGGCACCTGCTCCTCCACCTCCTCCTGGGGCACCAGTTCCTCCCCCTCCTCCTGGGACACCTGCTCCTCCCCCTCCTCCTGGGGCACCTGCTCCTCCCCCCCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCTCCTGCTCCTCCACCTCCTCCTGGGGCACCTGCTCCTCCACCTCCTCCTGGGGCACCTGTTAAAGGAGGTCCTTTTCCATGGTCTCTTCCTGGGAGTGGTGATGAAAATGTGTCAAGCACAACGGGACCTTCACCAACTAGCTCAAAGGGACGATTTCTATCACGTACGGTTACCTCAAAGAATAACGCCAAAAAGTTGAAGCCATTGCATTGGTTGAAATTATCAAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCTGGCGAAGCTTCCAAGGCCCCAGATATTGATATGTCAGAGCTTGAGCATCTCTTCTCAGCAGCAGCCCCAAGTTCAGGTGCTGCCAAAAAGTCAAATGCCCAAAGCTCATCCGGGCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCATTACATGATTTAGTGAGCTCAGTGCTAGAACTGGAAGAATCAGCACTGGACACTGATCAGGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGGGAAAAGGAGAAGTTAGGGAGATGCGAACAGTTCTTGATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCGTTCAAGATTCAATTTCACTCTCAGGTTGAAATACTGCTATATTCATGCATCCTTACCGGAAAAAAAATGGCTTTACACTTATTTCCAATCAAGAATTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTCACTGAGACACGTGCACGGGACAGGAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTACCGGAAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGATCCAATTAAAGTTTTTGGCTGAGGAGATGCAAGCTTTAAACAAAGGATTAGAAAAAGTGGTACAGGAACTATCAACCTCTGAAAATGATGGGCCTATATCAGAAAGTTTCCGCAAGAAATTGAAAGATTTCCTGTGTTCTGCTGAAGCTGAAGTTCGTTCATTGGCTTCACTATATTCTAGCGTGGGTAGGAACGTGGATGCATTAATTCTCTATTTTGGTGAAGATCCATCTCGCTGCCCATTTGAGCAAGTTGGGTCAACTTTGCTCAACTTTACTAGGATGTTCAACAAAGCCCATGAAGAAAACAGCAAGCAGCTAGAGCTCGAAATGAAGAAAGCAGCAGAAACTGACATTGATAACCAAAACGGAGAACTGCATTGCACTGCAAACGTTAGGTCTGAAGCTGGCTGTGGCGGTGTGGCCAGGAATGACAAAGGTTGGTGGCTGTATAGTTTGTGGAGGAAATTGGATTATGTTAATTTGTGTTGTTATTGTTGA 3858 0.4266 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWNEENYKVYMDGIVRQLRENLPDASILIFNFREENMKSQMANIMSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGQQNVLLMHCERGGWPVLAFMLSALLIYRKVYTGEQRTLDMVYRQAPHELLHLLTPLNPVPSQLRYLLYVSRRNVAIDWPPLDRSLMLDCVILRCFPNFDGEGGCHPLFRIYGQDPFSADKNPKMLYSTPKRSKNVRAYKQGECELIKIDINCHIQGDVVIEGINLNGDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPKDFRAEILFSEMDAAAAVIADSTSCFEEKEGLPMEAFAKVQEIFSHVDWMDPKADVALNVLQQISASAMNDRLETISDQYAETSPLLHETSPRTPQGYLNEERQCLSSTKRSSDNDMSRKEDKTNKVEGMPQQGQGYQETTKSFERTLQSNKCPTGPTNLGIKLHAPHPALSSSVDTSFSPRTPPLGPRSIGAKEVHDSPLQTESPPLQSKHQSQDRSHSPNSIHTPGTQSSSTIHSKSPADAISYPSASASTSTHPSPSLSSKNVNEIPPIRTRLESSPSRPPTPPPPPTPPLKDHRLVQAKPPPPPPPPKTEQLVKVGPLPSPLSPMNVEPQVRDGPSPPPPPPLKEEQPVRFKPPPPPPPPCLSGKVAGSTIVPPPPPPPPLSYDHTNFSLQKSPAAPTIPAAPPPPGAPAPPPPPGAPVPPPPPGTPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPVKGGPFPWSLPGSGDENVSSTTGPSPTSSKGRFLSRTVTSKNNAKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPDIDMSELEHLFSAAAPSSGAAKKSNAQSSSGPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLVSSVLELEESALDTDQVENLIKFCPTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFHSQVEILLYSCILTGKKMALHLFPIKNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDRKMTLMHYLCKVLVDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQALNKGLEKVVQELSTSENDGPISESFRKKLKDFLCSAEAEVRSLASLYSSVGRNVDALILYFGEDPSRCPFEQVGSTLLNFTRMFNKAHEENSKQLELEMKKAAETDIDNQNGELHCTANVRSEAGCGGVARNDKGWWLYSLWRKLDYVNLCCYC 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02286 1285 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 407 431 - -
Cca11g02286 1285 Coils Coil 1216 1236 - -
Cca11g02286 1285 Coils Coil 1122 1149 - -
Cca11g02286 1285 SMART it6_source 606 1284 IPR015425 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 605 641 - -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 726 805 - -
Cca11g02286 1285 Gene3D - 200 340 - -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 453 482 - -
Cca11g02286 1285 SUPERFAMILY Formin homology 2 domain (FH2 domain) 785 1233 - -
Cca11g02286 1285 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Cca11g02286 1285 SMART PTEN_C2_2 197 336 IPR014020 -
Cca11g02286 1285 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 814 843 - -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 893 914 - -
Cca11g02286 1285 Pfam Formin Homology 2 Domain 842 1215 IPR015425 -
Cca11g02286 1285 ProSiteProfiles Formin homology-2 (FH2) domain profile. 838 1241 IPR015425 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 660 692 - -
Cca11g02286 1285 PANTHER FORMIN-J 1 753 - -
Cca11g02286 1285 PANTHER FORMIN-J 729 1236 - -
Cca11g02286 1285 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 432 452 - -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 896 913 - -
Cca11g02286 1285 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 527 599 - -
Cca11g02286 1285 MobiDBLite consensus disorder prediction 407 843 - -
Cca11g02286 1285 Gene3D Formin, FH2 domain 837 1226 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02286 Cca-Chr11 49264936 49278578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02286 823 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 73.850 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02286 - - gmx:100786096 1179.85