Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02281 atgcaaatgcaaatgcaaatgcaaatgcaaGGCCCTCCACCGCAGATCCAGTTGGACCAAACTTCCAACGACGATTTCCTCAAGCAAATGCTCTCAAACCTCCCTCCTTCCTCCTTCTGGGACCCCCACGACCACTCCGCCTCCGCTCTCATGCCCCTCTCCTTTCACCAAACTCTCTACAATATTAATGCCTCTCCCCAACCTCCCAACCCTCACACTCACACTTTCGGACCTTCCGCTCCGCCCAAACACAAGGTCAGGGCCAGGAGAGGACAAGCCACCGACCCACACAGCATCGCCGAAAGATTACGGAGGGAGAGAATCGCAGAGAGAATGAAGGCCCTGCAAGAACTCGTTCCCAATGCCAACAAGACTGACAAGGCCTCTATGCTGGATGAGATCATCGATTATGTCAAGTTCCTACAGCTCCAAGTTAAGGTTTTAAGCATGAGCAGATTGGGGGGTGCTGCGGCTGTGGCTCCCGTGGTGGGCGAAATGTCGTCAGAGGGAGGGAAGGTGAAGGGGAATGAAGCGTCCTCAAACGACAGCCTGGCCATGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAGGACATGGGCTCCGCCATGCAGTACCTTCAGGGGAAAGGCCTCTGCCTCATGCCCATTTCTCTTGCCACCGCCATCTCCAATGCCACGTCTCGCACCTTCATCAACGCTCATGCTCCGCCCACCTCTCCCGGACCCAATTCCTGA 735 0.5415 MQMQMQMQMQGPPPQIQLDQTSNDDFLKQMLSNLPPSSFWDPHDHSASALMPLSFHQTLYNINASPQPPNPHTHTFGPSAPPKHKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPVVGEMSSEGGKVKGNEASSNDSLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISNATSRTFINAHAPPTSPGPNS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02281 244 Gene3D - 87 149 IPR036638 GO:0046983
Cca11g02281 244 SMART finulus 98 147 IPR011598 GO:0046983
Cca11g02281 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 151 IPR036638 GO:0046983
Cca11g02281 244 MobiDBLite consensus disorder prediction 62 95 - -
Cca11g02281 244 PANTHER TRANSCRIPTION FACTOR BHLH69 59 231 - -
Cca11g02281 244 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 59 231 - -
Cca11g02281 244 Pfam Helix-loop-helix DNA-binding domain 97 142 IPR011598 GO:0046983
Cca11g02281 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02281 Cca-Chr11 49158951 49161845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02281 73 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 75.000 2.65e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca11g02281 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02281 - - ccaj:109810200 460.685